PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LD2
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (6 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF HUNTINGTIN (HTT17) IN PRESENCE OF DPC MICELLES
Authors
:
M. Michalek, E. S. Salnikov, S. Werten, B. Bechinger
Date
:
13 May 11 (Deposition) - 16 May 12 (Release) - 21 Aug 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Alpha Helix, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Michalek, E. S. Salnikov, B. Bechinger
Structure And Topology Of The Huntingtin 1-17 Membrane Anchor By A Combined Solution And Solid-State Nmr Approach.
Biophys. J. V. 105 699 2013
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NH2
1
Mod. Amino Acid
AMINO GROUP
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:1-18)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000355072
1
ENSE00001251499
chr4:
3076408-3076815
408
HD_HUMAN
1-88
88
1
A:1-18
18
1.2
ENST00000355072
2
ENSE00000854943
chr4:
3088666-3088749
84
HD_HUMAN
88-116
29
0
-
-
1.3
ENST00000355072
3
ENSE00000854944
chr4:
3101001-3101121
121
HD_HUMAN
116-156
41
0
-
-
1.4
ENST00000355072
4
ENSE00000854945
chr4:
3105551-3105610
60
HD_HUMAN
157-176
20
0
-
-
1.5
ENST00000355072
5
ENSE00000854946
chr4:
3107084-3107163
80
HD_HUMAN
177-203
27
0
-
-
1.6
ENST00000355072
6
ENSE00000854947
chr4:
3109012-3109150
139
HD_HUMAN
203-249
47
0
-
-
1.7a
ENST00000355072
7a
ENSE00000854948
chr4:
3117031-3117172
142
HD_HUMAN
250-297
48
0
-
-
1.8
ENST00000355072
8
ENSE00000854949
chr4:
3117812-3117990
179
HD_HUMAN
297-356
60
0
-
-
1.9a
ENST00000355072
9a
ENSE00001506819
chr4:
3122955-3123159
205
HD_HUMAN
357-425
69
0
-
-
1.10a
ENST00000355072
10a
ENSE00001506818
chr4:
3124616-3124663
48
HD_HUMAN
425-441
17
0
-
-
1.11
ENST00000355072
11
ENSE00000854953
chr4:
3127276-3127356
81
HD_HUMAN
441-468
28
0
-
-
1.12
ENST00000355072
12
ENSE00000854954
chr4:
3128991-3129331
341
HD_HUMAN
468-581
114
0
-
-
1.13b
ENST00000355072
13b
ENSE00000854955
chr4:
3131651-3131774
124
HD_HUMAN
582-623
42
0
-
-
1.13c
ENST00000355072
13c
ENSE00000854956
chr4:
3132032-3132150
119
HD_HUMAN
623-662
40
0
-
-
1.14
ENST00000355072
14
ENSE00000854957
chr4:
3133013-3133124
112
HD_HUMAN
663-700
38
0
-
-
1.15
ENST00000355072
15
ENSE00000854958
chr4:
3133365-3133502
138
HD_HUMAN
700-746
47
0
-
-
1.16
ENST00000355072
16
ENSE00000854959
chr4:
3134289-3134447
159
HD_HUMAN
746-799
54
0
-
-
1.17
ENST00000355072
17
ENSE00000854960
chr4:
3134541-3134638
98
HD_HUMAN
799-831
33
0
-
-
1.18
ENST00000355072
18
ENSE00000854961
chr4:
3136128-3136267
140
HD_HUMAN
832-878
47
0
-
-
1.19
ENST00000355072
19
ENSE00000854962
chr4:
3137631-3137694
64
HD_HUMAN
878-899
22
0
-
-
1.20
ENST00000355072
20
ENSE00000854963
chr4:
3137953-3138053
101
HD_HUMAN
900-933
34
0
-
-
1.21
ENST00000355072
21
ENSE00000854964
chr4:
3142237-3142383
147
HD_HUMAN
933-982
50
0
-
-
1.22
ENST00000355072
22
ENSE00000854965
chr4:
3144493-3144613
121
HD_HUMAN
982-1022
41
0
-
-
1.23
ENST00000355072
23
ENSE00000854966
chr4:
3146879-3146955
77
HD_HUMAN
1023-1048
26
0
-
-
1.24
ENST00000355072
24
ENSE00000854967
chr4:
3148524-3148675
152
HD_HUMAN
1048-1099
52
0
-
-
1.25
ENST00000355072
25
ENSE00000854968
chr4:
3149732-3149934
203
HD_HUMAN
1099-1166
68
0
-
-
1.26
ENST00000355072
26
ENSE00000854969
chr4:
3156020-3156146
127
HD_HUMAN
1167-1209
43
0
-
-
1.27
ENST00000355072
27
ENSE00000854970
chr4:
3158799-3158926
128
HD_HUMAN
1209-1251
43
0
-
-
1.28a
ENST00000355072
28a
ENSE00000854971
chr4:
3162009-3162119
111
HD_HUMAN
1252-1288
37
0
-
-
1.29
ENST00000355072
29
ENSE00000854972
chr4:
3174047-3174124
78
HD_HUMAN
1289-1314
26
0
-
-
1.30a
ENST00000355072
30a
ENSE00000854973
chr4:
3174635-3174858
224
HD_HUMAN
1315-1389
75
0
-
-
1.31
ENST00000355072
31
ENSE00000854974
chr4:
3176448-3176526
79
HD_HUMAN
1389-1415
27
0
-
-
1.32
ENST00000355072
32
ENSE00000854975
chr4:
3176673-3176834
162
HD_HUMAN
1416-1469
54
0
-
-
1.33
ENST00000355072
33
ENSE00000854976
chr4:
3179059-3179114
56
HD_HUMAN
1470-1488
19
0
-
-
1.34a
ENST00000355072
34a
ENSE00000854977
chr4:
3180025-3180173
149
HD_HUMAN
1488-1538
51
0
-
-
1.35a
ENST00000355072
35a
ENSE00000854978
chr4:
3182242-3182378
137
HD_HUMAN
1538-1583
46
0
-
-
1.36
ENST00000355072
36
ENSE00000854979
chr4:
3184081-3184197
117
HD_HUMAN
1584-1622
39
0
-
-
1.37
ENST00000355072
37
ENSE00000854980
chr4:
3188324-3188446
123
HD_HUMAN
1623-1663
41
0
-
-
1.38a
ENST00000355072
38a
ENSE00000854981
chr4:
3189378-3189613
236
HD_HUMAN
1664-1742
79
0
-
-
1.38c
ENST00000355072
38c
ENSE00000854982
chr4:
3190678-3190820
143
HD_HUMAN
1742-1790
49
0
-
-
1.39
ENST00000355072
39
ENSE00000854983
chr4:
3201459-3201666
208
HD_HUMAN
1790-1859
70
0
-
-
1.41
ENST00000355072
41
ENSE00000854984
chr4:
3205734-3205875
142
HD_HUMAN
1859-1906
48
0
-
-
1.42b
ENST00000355072
42b
ENSE00000854985
chr4:
3208223-3208402
180
HD_HUMAN
1907-1966
60
0
-
-
1.43
ENST00000355072
43
ENSE00000854986
chr4:
3208534-3208710
177
HD_HUMAN
1967-2025
59
0
-
-
1.44a
ENST00000355072
44a
ENSE00000854987
chr4:
3209008-3209084
77
HD_HUMAN
2026-2051
26
0
-
-
1.45a
ENST00000355072
45a
ENSE00000854988
chr4:
3210500-3210638
139
HD_HUMAN
2051-2097
47
0
-
-
1.46
ENST00000355072
46
ENSE00000854989
chr4:
3211554-3211676
123
HD_HUMAN
2098-2138
41
0
-
-
1.47b
ENST00000355072
47b
ENSE00000854990
chr4:
3213656-3213869
214
HD_HUMAN
2139-2210
72
0
-
-
1.48a
ENST00000355072
48a
ENSE00000854991
chr4:
3214291-3214436
146
HD_HUMAN
2210-2258
49
0
-
-
1.49
ENST00000355072
49
ENSE00000854992
chr4:
3215685-3215862
178
HD_HUMAN
2259-2318
60
0
-
-
1.50
ENST00000355072
50
ENSE00000854993
chr4:
3216837-3216938
102
HD_HUMAN
2318-2352
35
0
-
-
1.51
ENST00000355072
51
ENSE00000854994
chr4:
3219492-3219679
188
HD_HUMAN
2352-2414
63
0
-
-
1.52
ENST00000355072
52
ENSE00000854995
chr4:
3221909-3222035
127
HD_HUMAN
2415-2457
43
0
-
-
1.53
ENST00000355072
53
ENSE00000854996
chr4:
3224114-3224214
101
HD_HUMAN
2457-2490
34
0
-
-
1.54
ENST00000355072
54
ENSE00000854997
chr4:
3225133-3225287
155
HD_HUMAN
2491-2542
52
0
-
-
1.55
ENST00000355072
55
ENSE00000854998
chr4:
3225719-3225858
140
HD_HUMAN
2542-2589
48
0
-
-
1.56
ENST00000355072
56
ENSE00000854999
chr4:
3227388-3227470
83
HD_HUMAN
2589-2616
28
0
-
-
1.57a
ENST00000355072
57a
ENSE00000855000
chr4:
3230342-3230472
131
HD_HUMAN
2617-2660
44
0
-
-
1.57d
ENST00000355072
57d
ENSE00000855001
chr4:
3230607-3230736
130
HD_HUMAN
2660-2703
44
0
-
-
1.58b
ENST00000355072
58b
ENSE00000855002
chr4:
3231614-3231769
156
HD_HUMAN
2704-2755
52
0
-
-
1.59
ENST00000355072
59
ENSE00000855003
chr4:
3234890-3235080
191
HD_HUMAN
2756-2819
64
0
-
-
1.60b
ENST00000355072
60b
ENSE00000855004
chr4:
3237011-3237125
115
HD_HUMAN
2819-2857
39
0
-
-
1.61b
ENST00000355072
61b
ENSE00000855005
chr4:
3237292-3237505
214
HD_HUMAN
2858-2929
72
0
-
-
1.62b
ENST00000355072
62b
ENSE00000855006
chr4:
3237876-3237981
106
HD_HUMAN
2929-2964
36
0
-
-
1.63
ENST00000355072
63
ENSE00000855007
chr4:
3240174-3240336
163
HD_HUMAN
2964-3018
55
0
-
-
1.64
ENST00000355072
64
ENSE00001251513
chr4:
3240545-3240705
161
HD_HUMAN
3019-3072
54
0
-
-
1.65b
ENST00000355072
65b
ENSE00002026783
chr4:
3241573-3245676
4104
HD_HUMAN
3072-3142
71
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (79 KB)
Header - Asym.Unit
Biol.Unit 1 (6 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LD2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help