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Getting 'Exon' information from database.
2LD1
Asym. Unit
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (39 KB)
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Models
(34 )
Title
:
STRUCTURES AND CHEMICAL SHIFT ASSIGNMENTS FOR THE ADD DOMAIN OF THE ATRX PROTEIN
Authors
:
D. Neuhaus, J. Yang
Date
:
13 May 11 (Deposition) - 08 Jun 11 (Release) - 08 Jun 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (34 x)
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Argentaro, J. C. Yang, L. Chapman, M. S. Kowalczyk, R. J. Gibbons, D. R. Higgs, D. Neuhaus, D. Rhodes
Structural Consequences Of Disease-Causing Mutations In The Atrx-Dnmt3-Dnmt3L (Add) Domain Of The Chromatin-Associated Protein Atrx.
Proc. Natl. Acad. Sci. Usa V. 104 11939 2007
[
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:171 , CYS A:174 , CYS A:197 , CYS A:200
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
CYS A:220 , CYS A:223 , CYS A:240 , CYS A:243
BINDING SITE FOR RESIDUE ZN A 2
3
AC3
SOFTWARE
CYS A:232 , CYS A:235 , CYS A:265 , CYS A:268
BINDING SITE FOR RESIDUE ZN A 3
[
close Site info
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SAPs(SNPs)/Variants
(17, 17)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_012113 (G175E, chain A, )
02: VAR_012115 (N179S, chain A, )
03: VAR_001226 (P190A, chain A, )
04: VAR_012116 (P190L, chain A, )
05: VAR_012117 (P190S, chain A, )
06: VAR_001227 (L192F, chain A, )
07: VAR_012118 (V194I, chain A, )
08: VAR_001228 (C200S, chain A, )
09: VAR_012119 (Q219P, chain A, )
10: VAR_001229 (C220R, chain A, )
11: VAR_032625 (C220Y, chain A, )
12: VAR_001230 (W222S, chain A, )
13: VAR_001231 (C243F, chain A, )
14: VAR_001232 (R246C, chain A, )
15: VAR_010914 (R246L, chain A, )
16: VAR_012120 (G249C, chain A, )
17: VAR_001233 (G249D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_012113
G
175
E
ATRX_HUMAN
Disease (ATRX)
---
A
G
175
E
02
UniProt
VAR_012115
N
179
S
ATRX_HUMAN
Disease (ATRX)
---
A
N
179
S
03
UniProt
VAR_001226
P
190
A
ATRX_HUMAN
Disease (ATRX)
---
A
P
190
A
04
UniProt
VAR_012116
P
190
L
ATRX_HUMAN
Disease (ATRX)
---
A
P
190
L
05
UniProt
VAR_012117
P
190
S
ATRX_HUMAN
Disease (ATRX)
---
A
P
190
S
06
UniProt
VAR_001227
L
192
F
ATRX_HUMAN
Disease (ATRX)
---
A
L
192
F
07
UniProt
VAR_012118
V
194
I
ATRX_HUMAN
Disease (ATRX)
---
A
V
194
I
08
UniProt
VAR_001228
C
200
S
ATRX_HUMAN
Disease (ATRX)
---
A
C
200
S
09
UniProt
VAR_012119
Q
219
P
ATRX_HUMAN
Disease (ATRX)
---
A
Q
219
P
10
UniProt
VAR_001229
C
220
R
ATRX_HUMAN
Disease (ATRX)
---
A
C
220
R
11
UniProt
VAR_032625
C
220
Y
ATRX_HUMAN
Disease (MRXSHF1)
---
A
C
220
Y
12
UniProt
VAR_001230
W
222
S
ATRX_HUMAN
Disease (ATRX)
---
A
W
222
S
13
UniProt
VAR_001231
C
243
F
ATRX_HUMAN
Disease (ATRX)
---
A
C
243
F
14
UniProt
VAR_001232
R
246
C
ATRX_HUMAN
Disease (ATRX)
---
A
R
246
C
15
UniProt
VAR_010914
R
246
L
ATRX_HUMAN
Disease (ATRX)
---
A
R
246
L
16
UniProt
VAR_012120
G
249
C
ATRX_HUMAN
Disease (ATRX)
---
A
G
249
C
17
UniProt
VAR_001233
G
249
D
ATRX_HUMAN
Disease (ATRX)
---
A
G
249
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADD (A:160-296)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADD
PS51533
ADD domain profile.
ATRX_HUMAN
159-296
1
A:160-296
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.7a (A:155-162 (gaps))
Exon 1.9 (A:163-198)
Exon 1.10 (A:199-221)
Exon 1.11b (A:221-296)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7a
2: Boundary 1.7a/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11b
5: Boundary 1.11b/1.12a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373344
1a
ENSE00002167359
X:77041702-77041468
235
ATRX_HUMAN
1-7
7
0
-
-
1.2
ENST00000373344
2
ENSE00001636919
X:76972720-76972608
113
ATRX_HUMAN
7-45
39
0
-
-
1.4b
ENST00000373344
4b
ENSE00001688675
X:76954117-76954062
56
ATRX_HUMAN
45-63
19
0
-
-
1.5
ENST00000373344
5
ENSE00001763951
X:76953123-76953071
53
ATRX_HUMAN
64-81
18
0
-
-
1.6
ENST00000373344
6
ENSE00001652735
X:76952192-76952065
128
ATRX_HUMAN
81-124
44
0
-
-
1.7a
ENST00000373344
7a
ENSE00002168990
X:76949426-76949313
114
ATRX_HUMAN
124-162
39
1
A:155-162 (gaps)
19
1.9
ENST00000373344
9
ENSE00002165776
X:76944420-76944311
110
ATRX_HUMAN
162-198
37
1
A:163-198
36
1.10
ENST00000373344
10
ENSE00001694382
X:76940498-76940431
68
ATRX_HUMAN
199-221
23
1
A:199-221
23
1.11b
ENST00000373344
11b
ENSE00002071055
X:76940085-76937012
3074
ATRX_HUMAN
221-1246
1026
1
A:221-296
76
1.12a
ENST00000373344
12a
ENSE00001638399
X:76931793-76931721
73
ATRX_HUMAN
1246-1270
25
0
-
-
1.13
ENST00000373344
13
ENSE00001655114
X:76920267-76920134
134
ATRX_HUMAN
1270-1315
46
0
-
-
1.14
ENST00000373344
14
ENSE00001618412
X:76919047-76918871
177
ATRX_HUMAN
1315-1374
60
0
-
-
1.15
ENST00000373344
15
ENSE00001759922
X:76912143-76912050
94
ATRX_HUMAN
1374-1405
32
0
-
-
1.16
ENST00000373344
16
ENSE00002155398
X:76909690-76909588
103
ATRX_HUMAN
1405-1439
35
0
-
-
1.17
ENST00000373344
17
ENSE00001804555
X:76907843-76907604
240
ATRX_HUMAN
1440-1519
80
0
-
-
1.18
ENST00000373344
18
ENSE00001692523
X:76891547-76891406
142
ATRX_HUMAN
1520-1567
48
0
-
-
1.19a
ENST00000373344
19a
ENSE00001634558
X:76890194-76890085
110
ATRX_HUMAN
1567-1603
37
0
-
-
1.20a
ENST00000373344
20a
ENSE00001729307
X:76889200-76889054
147
ATRX_HUMAN
1604-1652
49
0
-
-
1.21
ENST00000373344
21
ENSE00001679104
X:76888872-76888695
178
ATRX_HUMAN
1653-1712
60
0
-
-
1.22
ENST00000373344
22
ENSE00001611054
X:76876000-76875863
138
ATRX_HUMAN
1712-1758
47
0
-
-
1.23
ENST00000373344
23
ENSE00001600235
X:76874449-76874274
176
ATRX_HUMAN
1758-1816
59
0
-
-
1.24
ENST00000373344
24
ENSE00001614801
X:76872198-76872081
118
ATRX_HUMAN
1817-1856
40
0
-
-
1.26b
ENST00000373344
26b
ENSE00001611019
X:76856033-76855903
131
ATRX_HUMAN
1856-1899
44
0
-
-
1.27b
ENST00000373344
27b
ENSE00001762228
X:76855289-76855201
89
ATRX_HUMAN
1900-1929
30
0
-
-
1.28
ENST00000373344
28
ENSE00001627804
X:76855049-76854880
170
ATRX_HUMAN
1929-1986
58
0
-
-
1.29
ENST00000373344
29
ENSE00001690714
X:76849319-76849166
154
ATRX_HUMAN
1986-2037
52
0
-
-
1.30
ENST00000373344
30
ENSE00001637691
X:76845410-76845304
107
ATRX_HUMAN
2037-2073
37
0
-
-
1.31
ENST00000373344
31
ENSE00001632927
X:76829823-76829715
109
ATRX_HUMAN
2073-2109
37
0
-
-
1.32
ENST00000373344
32
ENSE00001674842
X:76814317-76814140
178
ATRX_HUMAN
2109-2168
60
0
-
-
1.33
ENST00000373344
33
ENSE00001762255
X:76813116-76812922
195
ATRX_HUMAN
2169-2233
65
0
-
-
1.34
ENST00000373344
34
ENSE00001605899
X:76778879-76778730
150
ATRX_HUMAN
2234-2283
50
0
-
-
1.35
ENST00000373344
35
ENSE00001640278
X:76777866-76777741
126
ATRX_HUMAN
2284-2325
42
0
-
-
1.36
ENST00000373344
36
ENSE00001609746
X:76776976-76776881
96
ATRX_HUMAN
2326-2357
32
0
-
-
1.37
ENST00000373344
37
ENSE00001620267
X:76776394-76776266
129
ATRX_HUMAN
2358-2400
43
0
-
-
1.38
ENST00000373344
38
ENSE00001885562
X:76764107-76760378
3730
ATRX_HUMAN
2401-2492
92
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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