PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LB3
Asym. Unit
Info
Asym.Unit (238 KB)
Biol.Unit 1 (13 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
STRUCTURE OF THE WW DOMAIN OF PIN1 IN COMPLEX WITH A HUMAN PHOSPHORYLATED SMAD3 DERIVED PEPTIDE
Authors
:
M. J. Macias, E. Aragon, N. Goerner, A. Zaromytidou, Q. Xi, A. Escobedo, J. Massague
Date
:
22 Mar 11 (Deposition) - 06 Jul 11 (Release) - 06 Jul 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Pin1, Smad, Cdk, Signal Transduction, Signaling Protein-Transcription Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Aragon, N. Goerner, A. I. Zaromytidou, Q. Xi, A. Escobedo, J. Massague, M. J. Macias
A Smad Action Turnover Switch Operated By Ww Domain Readers Of A Phosphoserine Code.
Genes Dev. V. 25 1275 2011
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: WW_DOMAIN_1 (A:15-41)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WW_DOMAIN_1
PS01159
WW/rsp5/WWP domain signature.
PIN1_HUMAN
11-37
1
A:15-41
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:10-24)
Exon 1.2 (A:24-45)
Exon 2.6 (B:176-178)
Exon 2.7 (B:178-183)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3a
4: Boundary 2.5/2.6
5: Boundary 2.6/2.7
6: Boundary 2.7/2.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000247970
1a
ENSE00000872705
chr19:
9945999-9946078
80
PIN1_HUMAN
1-20
20
1
A:10-24
15
1.2
ENST00000247970
2
ENSE00000872706
chr19:
9949112-9949324
213
PIN1_HUMAN
20-91
72
1
A:24-45
22
1.3a
ENST00000247970
3a
ENSE00000872707
chr19:
9958706-9958816
111
PIN1_HUMAN
91-128
38
0
-
-
1.4a
ENST00000247970
4a
ENSE00000872708
chr19:
9959766-9960358
593
PIN1_HUMAN
128-163
36
0
-
-
2.2
ENST00000262160
2
ENSE00001533831
chr18:
45456930-45456732
199
SMAD2_HUMAN
-
0
0
-
-
2.3
ENST00000262160
3
ENSE00001191187
chr18:
45423180-45422892
289
SMAD2_HUMAN
1-79
79
0
-
-
2.4
ENST00000262160
4
ENSE00001248514
chr18:
45396935-45396846
90
SMAD2_HUMAN
79-109
31
0
-
-
2.5
ENST00000262160
5
ENSE00001248509
chr18:
45395807-45395614
194
SMAD2_HUMAN
109-174
66
0
-
-
2.6
ENST00000262160
6
ENSE00001248503
chr18:
45394828-45394694
135
SMAD2_HUMAN
174-219
46
1
B:176-178
3
2.7
ENST00000262160
7
ENSE00001728507
chr18:
45391504-45391430
75
SMAD2_HUMAN
219-244
26
1
B:178-183
6
2.8
ENST00000262160
8
ENSE00001248493
chr18:
45377698-45377645
54
SMAD2_HUMAN
244-262
19
0
-
-
2.9
ENST00000262160
9
ENSE00001248484
chr18:
45375058-45374846
213
SMAD2_HUMAN
262-333
72
0
-
-
2.10
ENST00000262160
10
ENSE00001248481
chr18:
45372171-45372034
138
SMAD2_HUMAN
333-379
47
0
-
-
2.11
ENST00000262160
11
ENSE00001598119
chr18:
45371855-45371711
145
SMAD2_HUMAN
379-427
49
0
-
-
2.12b
ENST00000262160
12b
ENSE00001949705
chr18:
45368321-45357922
10400
SMAD2_HUMAN
427-467
41
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_WW_2lb3A01 (A:11-41)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: WW]
(77)
Family
:
WW
(77)
Homo sapiens (Human)
(62)
1a
WW-2lb3A01
A:11-41
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (238 KB)
Header - Asym.Unit
Biol.Unit 1 (13 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LB3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help