PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LAW
Asym. Unit
Info
Asym.Unit (244 KB)
Biol.Unit 1 (13 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
STRUCTURE OF THE SECOND WW DOMAIN FROM HUMAN YAP IN COMPLEX WITH A HUMAN SMAD1 DERIVED PEPTIDE
Authors
:
M. J. Macias, E. Aragon, N. Goerner, A. Zaromytidou, Q. Xi, A. Escobedo, J. Massague
Date
:
22 Mar 11 (Deposition) - 06 Jul 11 (Release) - 06 Jul 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Yap, Smad1, Cdk, Signal Transduction, Signaling Protein-Transcription Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Aragon, N. Goerner, A. I. Zaromytidou, Q. Xi, A. Escobedo, J. Massague, M. J. Macias
A Smad Action Turnover Switch Operated By Ww Domain Readers Of A Phosphoserine Code.
Genes Dev. V. 25 1275 2011
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: WW_DOMAIN_2 (-|A:230-263)
2: WW_DOMAIN_1 (-|A:236-261)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WW_DOMAIN_2
PS50020
WW/rsp5/WWP domain profile.
YAP1_HUMAN
171-204
230-263
1
-
A:230-263
2
WW_DOMAIN_1
PS01159
WW/rsp5/WWP domain signature.
YAP1_HUMAN
177-202
236-261
1
-
A:236-261
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.4 (A:230-230)
Exon 1.5a (A:230-263)
Exon 2.11 (B:222-233)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5a
3: Boundary 1.5a/1.6a
4: Boundary 2.10b/2.11
5: Boundary 2.11/2.12d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000282441
1a
ENSE00002151482
chr11:
101981192-101981900
709
YAP1_HUMAN
1-107
107
0
-
-
1.3
ENST00000282441
3
ENSE00001105700
chr11:
101984875-101985125
251
YAP1_HUMAN
108-191
84
0
-
-
1.4
ENST00000282441
4
ENSE00001105694
chr11:
102033187-102033302
116
YAP1_HUMAN
191-230
40
1
A:230-230
1
1.5a
ENST00000282441
5a
ENSE00001311988
chr11:
102056749-102056862
114
YAP1_HUMAN
230-268
39
1
A:230-263
34
1.6a
ENST00000282441
6a
ENSE00001292600
chr11:
102076624-102076805
182
YAP1_HUMAN
268-328
61
0
-
-
1.7
ENST00000282441
7
ENSE00001321313
chr11:
102080248-102080295
48
YAP1_HUMAN
329-344
16
0
-
-
1.8
ENST00000282441
8
ENSE00001105702
chr11:
102094353-102094483
131
YAP1_HUMAN
345-388
44
0
-
-
1.10
ENST00000282441
10
ENSE00001105705
chr11:
102098200-102098312
113
YAP1_HUMAN
388-426
39
0
-
-
1.11f
ENST00000282441
11f
ENSE00001345991
chr11:
102100433-102104154
3722
YAP1_HUMAN
426-504
79
0
-
-
2.4d
ENST00000394092
4d
ENSE00001517478
chr4:
146403957-146404020
64
SMAD1_HUMAN
-
0
0
-
-
2.8i
ENST00000394092
8i
ENSE00002198357
chr4:
146435590-146436165
576
SMAD1_HUMAN
1-134
134
0
-
-
2.10b
ENST00000394092
10b
ENSE00001143049
chr4:
146460956-146461213
258
SMAD1_HUMAN
134-220
87
0
-
-
2.11
ENST00000394092
11
ENSE00001143042
chr4:
146463734-146463850
117
SMAD1_HUMAN
220-259
40
1
B:222-233
12
2.12d
ENST00000394092
12d
ENSE00001143034
chr4:
146467855-146468076
222
SMAD1_HUMAN
259-333
75
0
-
-
2.13c
ENST00000394092
13c
ENSE00001698603
chr4:
146474936-146475192
257
SMAD1_HUMAN
333-418
86
0
-
-
2.14a
ENST00000394092
14a
ENSE00002060589
chr4:
146478943-146479106
164
SMAD1_HUMAN
419-465
47
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_WW_2lawA01 (A:232-261)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: WW]
(77)
Family
:
WW
(77)
Homo sapiens (Human)
(62)
1a
WW-2lawA01
A:232-261
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (244 KB)
Header - Asym.Unit
Biol.Unit 1 (13 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LAW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
