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2L4H
Asym. Unit
Info
Asym.Unit (543 KB)
Biol.Unit 1 (51 KB)
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Models
(11 )
Title
:
THE SOLUTION STRUCTURE OF CALCIUM BOUND CIB1
Authors
:
H. Huang, H. J. Vogel
Date
:
06 Oct 10 (Deposition) - 09 Mar 11 (Release) - 25 May 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (11 x)
Biol. Unit 1: A (1x)
Keywords
:
Calcium And Integrin Binding Protein 1, Metal Binding Protein
(Keyword Search:
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Reference
:
H. Huang, H. Ishida, A. P. Yamniuk, H. J. Vogel
Solution Structures Of Ca2+-Cib1 And Mg2+-Cib1 And Their Interactions With The Platelet Integrin {Alpha}Iib Cytoplasmic Domain.
J. Biol. Chem. V. 286 17181 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:116 , ASP A:118 , ASP A:120 , THR A:122 , ASP A:127
BINDING SITE FOR RESIDUE CA A 500
2
AC2
SOFTWARE
ASP A:161 , ASP A:163 , ASP A:165 , THR A:167 , GLU A:172
BINDING SITE FOR RESIDUE CA A 501
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_019565 (S44T, chain A, )
2: VAR_048636 (I106T, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019565
S
44
T
CIB1_HUMAN
Polymorphism
3210935
A
S
44
T
2
UniProt
VAR_048636
I
106
T
CIB1_HUMAN
Polymorphism
11551250
A
I
106
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:103-138|A:148-183)
2: EF_HAND_1 (A:116-128|A:161-173)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CIB1_HUMAN
103-138
148-183
2
A:103-138
A:148-183
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CIB1_HUMAN
116-128
161-173
2
A:116-128
A:161-173
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Exons
(7, 7)
Info
All Exons
Exon 1.1 (A:8-17)
Exon 1.2 (A:18-29)
Exon 1.3 (A:29-65)
Exon 1.4 (A:66-116)
Exon 1.5 (A:116-155)
Exon 1.6 (A:156-185)
Exon 1.7 (A:185-191)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000328649
1
ENSE00001299592
chr15:
90777279-90777067
213
CIB1_HUMAN
1-17
17
1
A:8-17
10
1.2
ENST00000328649
2
ENSE00001329112
chr15:
90776935-90776901
35
CIB1_HUMAN
18-29
12
1
A:18-29
12
1.3
ENST00000328649
3
ENSE00001290832
chr15:
90775559-90775451
109
CIB1_HUMAN
29-65
37
1
A:29-65
37
1.4
ENST00000328649
4
ENSE00001318820
chr15:
90774739-90774589
151
CIB1_HUMAN
66-116
51
1
A:66-116
51
1.5
ENST00000328649
5
ENSE00001291592
chr15:
90774445-90774327
119
CIB1_HUMAN
116-155
40
1
A:116-155
40
1.6
ENST00000328649
6
ENSE00001309613
chr15:
90774254-90774166
89
CIB1_HUMAN
156-185
30
1
A:156-185
30
1.7
ENST00000328649
7
ENSE00001302723
chr15:
90773737-90773207
531
CIB1_HUMAN
185-191
7
1
A:185-191
7
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2l4ha_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
automated matches
(54)
Human (Homo sapiens) [TaxId: 9606]
(21)
1a
d2l4ha_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (543 KB)
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Header - Biol.Unit 1
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