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2L1G
Asym. Unit
Info
Asym.Unit (694 KB)
Biol.Unit 1 (42 KB)
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Models
(17 )
Title
:
RDC REFINED SOLUTION STRUCTURE OF THE THAP ZINC FINGER OF THAP1 IN COMPLEX WITH ITS 16BP RRM1 DNA TARGET
Authors
:
S. Campagne, V. Gervais, O. Saurel, A. Milon
Date
:
28 Jul 10 (Deposition) - 08 Sep 10 (Release) - 08 Sep 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C (17 x)
Biol. Unit 1: A,B,C (1x)
Keywords
:
Zinc Finger, Protein-Dna Complex, Dna Binding Domain, Transcription Factor, Ccch, Transcription-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Campagne, V. Gervais, O. Saurel, A. Milon
Rdc Refined Solution Structure Of The Thap Zinc Finger Of Thap1 In Complex With Its 16Bp Rrm1 Dna Target
To Be Published
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:5 , CYS A:10 , CYS A:54 , GLU A:56 , HIS A:57
BINDING SITE FOR RESIDUE ZN A 88
[
close Site info
]
SAPs(SNPs)/Variants
(29, 29)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_066677 (S6F, chain A, )
02: VAR_066678 (S6P, chain A, )
03: VAR_067356 (A7D, chain A, )
04: VAR_066679 (Y8C, chain A, )
05: VAR_066680 (G9C, chain A, )
06: VAR_065880 (N12K, chain A, )
07: VAR_066681 (R13H, chain A, )
08: VAR_066682 (K16E, chain A, )
09: VAR_066683 (D17G, chain A, )
10: VAR_067357 (S21C, chain A, )
11: VAR_065881 (S21T, chain A, )
12: VAR_066684 (H23P, chain A, )
13: VAR_066685 (K24E, chain A, )
14: VAR_066686 (P26L, chain A, )
15: VAR_066687 (P26R, chain A, )
16: VAR_065882 (R29P, chain A, )
17: VAR_066688 (R29Q, chain A, )
18: VAR_066689 (P30R, chain A, )
19: VAR_066690 (L32H, chain A, )
20: VAR_065883 (A39T, chain A, )
21: VAR_066691 (C54F, chain A, )
22: VAR_072272 (E56G, chain A, )
23: VAR_066692 (H57N, chain A, )
24: VAR_065884 (T59I, chain A, )
25: VAR_066694 (L72R, chain A, )
26: VAR_066695 (N75I, chain A, )
27: VAR_066696 (I80V, chain A, )
28: VAR_054788 (F81L, chain A, )
29: VAR_066697 (E83R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_066677
S
6
F
THAP1_HUMAN
Disease (DYT6)
---
A
S
6
F
02
UniProt
VAR_066678
S
6
P
THAP1_HUMAN
Disease (DYT6)
---
A
S
6
P
03
UniProt
VAR_067356
A
7
D
THAP1_HUMAN
Disease (DYT6)
---
A
A
7
D
04
UniProt
VAR_066679
Y
8
C
THAP1_HUMAN
Disease (DYT6)
---
A
Y
8
C
05
UniProt
VAR_066680
G
9
C
THAP1_HUMAN
Disease (DYT6)
---
A
G
9
C
06
UniProt
VAR_065880
N
12
K
THAP1_HUMAN
Disease (DYT6)
---
A
N
12
K
07
UniProt
VAR_066681
R
13
H
THAP1_HUMAN
Disease (DYT6)
---
A
R
13
H
08
UniProt
VAR_066682
K
16
E
THAP1_HUMAN
Disease (DYT6)
---
A
K
16
E
09
UniProt
VAR_066683
D
17
G
THAP1_HUMAN
Disease (DYT6)
---
A
D
17
G
10
UniProt
VAR_067357
S
21
C
THAP1_HUMAN
Disease (DYT6)
---
A
S
21
C
11
UniProt
VAR_065881
S
21
T
THAP1_HUMAN
Disease (DYT6)
---
A
S
21
T
12
UniProt
VAR_066684
H
23
P
THAP1_HUMAN
Disease (DYT6)
---
A
H
23
P
13
UniProt
VAR_066685
K
24
E
THAP1_HUMAN
Disease (DYT6)
---
A
K
24
E
14
UniProt
VAR_066686
P
26
L
THAP1_HUMAN
Disease (DYT6)
---
A
P
26
L
15
UniProt
VAR_066687
P
26
R
THAP1_HUMAN
Disease (DYT6)
---
A
P
26
R
16
UniProt
VAR_065882
R
29
P
THAP1_HUMAN
Disease (DYT6)
---
A
R
29
P
17
UniProt
VAR_066688
R
29
Q
THAP1_HUMAN
Disease (DYT6)
---
A
R
29
Q
18
UniProt
VAR_066689
P
30
R
THAP1_HUMAN
Disease (DYT6)
---
A
P
30
R
19
UniProt
VAR_066690
L
32
H
THAP1_HUMAN
Disease (DYT6)
---
A
L
32
H
20
UniProt
VAR_065883
A
39
T
THAP1_HUMAN
Disease (DYT6)
---
A
A
39
T
21
UniProt
VAR_066691
C
54
F
THAP1_HUMAN
Disease (DYT6)
---
A
C
54
F
22
UniProt
VAR_072272
E
56
G
THAP1_HUMAN
Disease (DYT6)
---
A
E
56
G
23
UniProt
VAR_066692
H
57
N
THAP1_HUMAN
Disease (DYT6)
---
A
H
57
N
24
UniProt
VAR_065884
T
59
I
THAP1_HUMAN
Disease (DYT6)
---
A
T
59
I
25
UniProt
VAR_066694
L
72
R
THAP1_HUMAN
Disease (DYT6)
---
A
L
72
R
26
UniProt
VAR_066695
N
75
I
THAP1_HUMAN
Disease (DYT6)
---
A
N
75
I
27
UniProt
VAR_066696
I
80
V
THAP1_HUMAN
Disease (DYT6)
---
A
I
80
V
28
UniProt
VAR_054788
F
81
L
THAP1_HUMAN
Disease (DYT6)
---
A
F
81
L
29
UniProt
VAR_066697
C
83
R
THAP1_HUMAN
Disease (DYT6)
---
A
E
83
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_THAP (A:1-81)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_THAP
PS50950
Zinc finger THAP-type profile
THAP1_HUMAN
1-81
1
A:1-81
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.1a (A:1-24)
Exon 1.3b (A:24-87)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000254250
1a
ENSE00000901799
chr8:
42698468-42698167
302
THAP1_HUMAN
1-24
24
1
A:1-24
24
1.3b
ENST00000254250
3b
ENSE00001090345
chr8:
42694524-42694329
196
THAP1_HUMAN
24-89
66
1
A:24-87
64
1.4b
ENST00000254250
4b
ENSE00002195192
chr8:
42693479-42691817
1663
THAP1_HUMAN
90-213
124
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2l1ga_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2l1ga_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_THAP_2l1gA01 (A:3-82)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: THAP]
(3)
Family
:
THAP
(3)
Homo sapiens (Human)
(2)
1a
THAP-2l1gA01
A:3-82
[
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]
Atom Selection
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Solvent
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
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