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Getting 'Exon' information from database.
2KZ1
Asym. Unit
Info
Asym.Unit (974 KB)
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Models
(10 )
Title
:
INTER-MOLECULAR INTERACTIONS IN A 44 KDA INTERFERON-RECEPTOR COMPLEX DETECTED BY ASYMMETRIC BACK-PROTONATION AND 2D NOESY
Authors
:
I. Nudelman, S. R. Akabayov, E. Schnur, Z. Biron, R. Levy, Y. Xu, D. Yang, J. Anglister
Date
:
10 Jun 10 (Deposition) - 23 Jun 10 (Release) - 07 Jul 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Interferon, Receptor, Docking, Complex, Antiviral Defense, Cytokine, Disulfide Bond, Glycoprotein, Secreted, Antiviral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
I. Nudelman, S. R. Akabayov, E. Schnur, Z. Biron, R. Levy, Y. Xu, D. Yang J. Anglister
Intermolecular Interactions In A 44 Kda Interferon-Receptor Complex Detected By Asymmetric Reverse-Protonation And Two-Dimensional Noesy
Biochemistry V. 49 5117 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_004012 (K23R, chain A, )
2: VAR_013001 (H34R, chain A, )
3: VAR_036329 (S154L, chain A, )
4: VAR_020523 (I169V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004012
K
46
R
IFNA2_HUMAN
Polymorphism
1061959
A
K
23
R
2
UniProt
VAR_013001
H
57
R
IFNA2_HUMAN
Unclassified
---
A
H
34
R
3
UniProt
VAR_036329
S
177
L
IFNA2_HUMAN
Unclassified
---
A
S
154
L
4
UniProt
VAR_020523
I
196
V
INAR2_HUMAN
Polymorphism
17860223
B
I
169
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: INTERFERON_A_B_D (A:122-140)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERFERON_A_B_D
PS00252
Interferon alpha, beta and delta family signature.
IFNA2_HUMAN
145-163
1
A:122-140
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Exons
(5, 5)
Info
All Exons
Exon 1.5 (B:11-47)
Exon 1.7b (B:47-105)
Exon 1.8a (B:105-153)
Exon 1.10 (B:154-206)
Exon 2.1 (A:1-165)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.7b
3: Boundary 1.7b/1.8a
4: Boundary 1.8a/1.10
5: Boundary 1.10/1.11
6: Boundary -/2.1
7: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000342136
1d
ENSE00001384199
chr21:
34602279-34602521
243
INAR2_HUMAN
-
0
0
-
-
1.3a
ENST00000342136
3a
ENSE00001366893
chr21:
34614145-34614282
138
INAR2_HUMAN
1-19
19
0
-
-
1.4
ENST00000342136
4
ENSE00001043262
chr21:
34615978-34616019
42
INAR2_HUMAN
19-33
15
0
-
-
1.5
ENST00000342136
5
ENSE00001784597
chr21:
34617256-34617379
124
INAR2_HUMAN
33-74
42
1
B:11-47
37
1.7b
ENST00000342136
7b
ENSE00001733110
chr21:
34619023-34619195
173
INAR2_HUMAN
74-132
59
1
B:47-105
59
1.8a
ENST00000342136
8a
ENSE00002144798
chr21:
34621014-34621159
146
INAR2_HUMAN
132-180
49
1
B:105-153
49
1.10
ENST00000342136
10
ENSE00002186976
chr21:
34624967-34625135
169
INAR2_HUMAN
181-237
57
1
B:154-206
53
1.11
ENST00000342136
11
ENSE00001781920
chr21:
34632902-34633032
131
INAR2_HUMAN
237-280
44
0
-
-
1.12g
ENST00000342136
12g
ENSE00001764722
chr21:
34635098-34636830
1733
INAR2_HUMAN
281-515
235
0
-
-
2.1
ENST00000380206
1
ENSE00001484102
chr9:
21385396-21384254
1143
IFNA2_HUMAN
1-211
211
1
A:1-165
165
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2kz1a_ (A:)
2a: SCOP_d2kz1b1 (B:11-109)
2b: SCOP_d2kz1b2 (B:110-206)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Interferons/interleukin-10 (IL-10)
(41)
Protein domain
:
Interferon-alpha 2a
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2kz1a_
A:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Interferon-alpha/beta receptor beta chain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d2kz1b1
B:11-109
2b
d2kz1b2
B:110-206
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2kz1A00 (A:1-165)
2a: CATH_2kz1B01 (B:11-106)
2b: CATH_2kz1B02 (B:107-206)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
2kz1A00
A:1-165
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
2kz1B01
B:11-106
2b
2kz1B02
B:107-206
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Interferon_2kz1A01 (A:3-163)
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Clan
:
4H_Cytokine
(48)
Family
:
Interferon
(3)
Homo sapiens (Human)
(1)
1a
Interferon-2kz1A01
A:3-163
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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