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Asym. Unit
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Asym.Unit (1.7 MB)
Biol.Unit 1 (179 KB)
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Models
(10 )
Title
:
SOLUTION NMR STRUCTURE OF V-1 BOUND TO CAPPING PROTEIN (CP)
Authors
:
A. Zwolak, I. Fujiwara, J. A. Hammer Iii, N. Tjandra
Date
:
11 May 10 (Deposition) - 09 Jun 10 (Release) - 09 Jun 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C (10 x)
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein-Protein Interaction, Capping Protein, V-1, Protein Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Zwolak, I. Fujiwara, J. A. Hammer Iii, N. Tjandra
Solution Nmr Structure Of V-1 Bound To Capping Protein (Cp)
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_CAZA1_CHICK_001 (F163I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAZA1_CHICK_001
*
F
163
I
CAZA1_CHICK
---
---
A
F
163
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(5, 6)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (C:606-705)
2: ANK_REPEAT (C:634-666|C:667-699)
3: F_ACTIN_CAPPING_BETA (B:362-367)
4: F_ACTIN_CAPPING_A_1 (A:196-204)
5: F_ACTIN_CAPPING_A_2 (A:256-266)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
MTPN_MOUSE
6-105
1
C:606-705
2
ANK_REPEAT
PS50088
Ankyrin repeat profile.
MTPN_MOUSE
34-66
67-99
2
C:634-666
C:667-699
3
F_ACTIN_CAPPING_BETA
PS00231
F-actin capping protein beta subunit signature.
CAPZB_CHICK
62-67
1
B:362-367
4
F_ACTIN_CAPPING_A_1
PS00748
F-actin capping protein alpha subunit signature 1.
CAZA1_CHICK
196-204
1
A:196-204
5
F_ACTIN_CAPPING_A_2
PS00749
F-actin capping protein alpha subunit signature 2.
CAZA1_CHICK
256-266
1
A:256-266
[
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Exons
(8, 8)
Info
All Exons
Exon 1.2a (B:302-330)
Exon 1.3 (B:331-371)
Exon 1.4 (B:371-409)
Exon 1.5 (B:409-456)
Exon 1.6 (B:457-495)
Exon 1.7 (B:496-517)
Exon 1.8 (B:518-543)
Exon 1.9 (B:543-571)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/1.10a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSGALT00000006425
2a
ENSGALE00000042043
chr21:
4747591-4747501
91
CAPZB_CHICK
1-30
30
1
B:302-330
29
1.3
ENSGALT00000006425
3
ENSGALE00000042051
chr21:
4734482-4734361
122
CAPZB_CHICK
31-71
41
1
B:331-371
41
1.4
ENSGALT00000006425
4
ENSGALE00000042045
chr21:
4723866-4723753
114
CAPZB_CHICK
71-109
39
1
B:371-409
39
1.5
ENSGALT00000006425
5
ENSGALE00000042044
chr21:
4709816-4709675
142
CAPZB_CHICK
109-156
48
1
B:409-456
48
1.6
ENSGALT00000006425
6
ENSGALE00000042049
chr21:
4709146-4709030
117
CAPZB_CHICK
157-195
39
1
B:457-495
39
1.7
ENSGALT00000006425
7
ENSGALE00000042042
chr21:
4702101-4702036
66
CAPZB_CHICK
196-217
22
1
B:496-517
22
1.8
ENSGALT00000006425
8
ENSGALE00000042048
chr21:
4701227-4701151
77
CAPZB_CHICK
218-243
26
1
B:518-543
26
1.9
ENSGALT00000006425
9
ENSGALE00000042047
chr21:
4699862-4699750
113
CAPZB_CHICK
243-276
34
1
B:543-571
29
1.10a
ENSGALT00000006425
10a
ENSGALE00000042050
chr21:
4697971-4697725
247
CAPZB_CHICK
-
0
0
-
-
[
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2kxpc_ (C:)
2a: SCOP_d2kxpa_ (A:)
3a: SCOP_d2kxpb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
Myotrophin
(3)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d2kxpc_
C:
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Subunits of heterodimeric actin filament capping protein Capz
(18)
Superfamily
:
Subunits of heterodimeric actin filament capping protein Capz
(18)
Family
:
Capz alpha-1 subunit
(10)
Protein domain
:
Capz alpha-1 subunit
(10)
Chicken (Gallus gallus) [TaxId: 9031]
(10)
2a
d2kxpa_
A:
Family
:
Capz beta-1 subunit
(7)
Protein domain
:
Capz beta-1 subunit
(6)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
3a
d2kxpb_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2kxpC00 (C:601-718)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Bantam,chickens (Gallus gallus)
(1)
1a
2kxpC00
C:601-718
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Ank_2_2kxpC01 (C:606-698)
2a: PFAM_F_actin_cap_A_2kxpA01 (A:12-281)
3a: PFAM_F_actin_cap_B_2kxpB01 (B:305-540)
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Clan
:
Ank
(35)
Family
:
Ank_2
(14)
Mus musculus (Mouse)
(3)
1a
Ank_2-2kxpC01
C:606-698
Clan
:
no clan defined [family: F-actin_cap_A]
(8)
Family
:
F-actin_cap_A
(8)
Gallus gallus (Chicken)
(5)
2a
F-actin_cap_A-2kxpA01
A:12-281
Clan
:
no clan defined [family: F_actin_cap_B]
(5)
Family
:
F_actin_cap_B
(5)
Gallus gallus (Chicken)
(5)
3a
F_actin_cap_B-2kxpB01
B:305-540
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Asym.Unit (1.7 MB)
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