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2KU7
Asym. Unit
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Asym.Unit (696 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF MLL1 PHD3-CYP33 RRM CHIMERIC PROTEIN
Authors
:
J. Song, Z. Wang, D. Patel
Date
:
12 Feb 10 (Deposition) - 07 Jul 10 (Release) - 21 Jul 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Mll1, Cyp33, Transcriptional Regulation, Rrm Domain, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Wang, J. Song, T. A. Milne, G. G. Wang, H. Li, C. D. Allis, D. J. Patel
Pro Isomerization In Mll1 Phd3-Bromo Cassette Connects H3K4Me Readout To Cyp33 And Hdac-Mediated Repression.
Cell(Cambridge, Mass. ) V. 141 1183 2010
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_052652 (E102P, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052652
Q
1975
P
KMT2A_HUMAN
Polymorphism
693598
A
E
102
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: RRM (A:64-140)
2: BROMODOMAIN_2 (A:47-49)
3: EPHD (A:58-105)
4: FYRN (A:117-131)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
PPIE_HUMAN
6-84
1
A:64-140
2
BROMODOMAIN_2
PS50014
Bromodomain profile.
KMT2A_HUMAN
1703-1748
1
A:47-49
3
EPHD
PS51805
Extended PHD (ePHD) domain profile.
KMT2A_HUMAN
1870-1978
1
A:58-105
4
FYRN
PS51542
FYR domain FYRN motif profile.
KMT2A_HUMAN
2018-2074
1
A:117-131
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Exons
(5, 5)
Info
All Exons
Exon 1.3c (A:59-69)
Exon 1.5b (A:69-102)
Exon 1.6a (A:102-116)
Exon 1.7a (A:117-125)
Exon 1.7e (A:126-140)
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All Exon Boundaries
1: Boundary -/1.3c
2: Boundary 1.3c/1.5b
3: Boundary 1.5b/1.6a
4: Boundary 1.6a/1.7a
5: Boundary 1.7a/1.7e
6: Boundary 1.7e/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000324379
3c
ENSE00001829050
chr1:
40204554-40204603
50
PPIE_HUMAN
1-11
11
1
A:59-69
11
1.5b
ENST00000324379
5b
ENSE00001614710
chr1:
40205837-40205935
99
PPIE_HUMAN
11-44
34
1
A:69-102
34
1.6a
ENST00000324379
6a
ENSE00001667693
chr1:
40207038-40207081
44
PPIE_HUMAN
44-58
15
1
A:102-116
15
1.7a
ENST00000324379
7a
ENSE00001735648
chr1:
40207567-40207593
27
PPIE_HUMAN
59-67
9
1
A:117-125
9
1.7e
ENST00000324379
7e
ENSE00000899667
chr1:
40208888-40208969
82
PPIE_HUMAN
68-95
28
1
A:126-140
15
1.8
ENST00000324379
8
ENSE00000899665
chr1:
40209496-40209596
101
PPIE_HUMAN
95-128
34
0
-
-
1.9b
ENST00000324379
9b
ENSE00000767971
chr1:
40211047-40211170
124
PPIE_HUMAN
129-170
42
0
-
-
1.10
ENST00000324379
10
ENSE00000899661
chr1:
40214575-40214760
186
PPIE_HUMAN
170-232
63
0
-
-
1.11a
ENST00000324379
11a
ENSE00002169791
chr1:
40218582-40218724
143
PPIE_HUMAN
232-279
48
0
-
-
1.12c
ENST00000324379
12c
ENSE00002143267
chr1:
40218959-40219379
421
PPIE_HUMAN
280-301
22
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RRM_1_2ku7A01 (A:66-136)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-2ku7A01
A:66-136
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Chain A
Asymmetric Unit 1
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Asym.Unit (696 KB)
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