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2KSA
Asym. Unit
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Asym.Unit (525 KB)
Biol.Unit 1 (105 KB)
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Models
(5 )
Title
:
SUBSTANCE P IN DMPC/CHAPS ISOTROPIC Q=0.25 BICELLES AS A LIGAND FOR NK1R
Authors
:
A. Gayen, C. Mukhopadhyay
Date
:
31 Dec 09 (Deposition) - 03 Nov 10 (Release) - 17 Nov 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (5 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Substance P, Dmpc/Chaps Bicelle, Autodock, Nk1R, Neuropeptide Receptor-Neuropeptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gayen, S. K. Goswami, C. Mukhopadhyay
Nmr Evidence Of Gm1-Induced Conformational Change Of Substance P Using Isotropic Bicelles
Biochim. Biophys. Acta 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_026826 (Y192H, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_026826
Y
192
H
NK1R_HUMAN
Unclassified
---
A
Y
192
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TACHYKININ (B:371-375|-)
2: G_PROTEIN_RECEP_F1_1 (A:118-134)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TACHYKININ
PS00267
Tachykinin family signature.
TKN1_HUMAN
64-69
103-108
1
B:371-375
-
2
G_PROTEIN_RECEP_F1_1
PS00237
G-protein coupled receptors family 1 signature.
NK1R_HUMAN
118-134
1
A:118-134
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Exons
(1, 1)
Info
All Exons
Exon 1.3 (B:365-375)
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1: Boundary 1.2a/1.3
2: Boundary 1.3/1.4b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000319273
1a
ENSE00001957284
chr7:
97361220-97361507
288
TKN1_HUMAN
-
0
0
-
-
1.2a
ENST00000319273
2a
ENSE00001039798
chr7:
97361916-97362047
132
TKN1_HUMAN
1-41
41
0
-
-
1.3
ENST00000319273
3
ENSE00000918961
chr7:
97363035-97363131
97
TKN1_HUMAN
42-74
33
1
B:365-375
11
1.4b
ENST00000319273
4b
ENSE00000918962
chr7:
97363560-97363604
45
TKN1_HUMAN
74-89
16
0
-
-
1.5
ENST00000319273
5
ENSE00001039796
chr7:
97364138-97364161
24
TKN1_HUMAN
89-97
9
0
-
-
1.6
ENST00000319273
6
ENSE00000877489
chr7:
97365611-97365664
54
TKN1_HUMAN
97-115
19
0
-
-
1.7c
ENST00000319273
7c
ENSE00001039794
chr7:
97369186-97369784
599
TKN1_HUMAN
115-129
15
0
-
-
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_7tm_1_2ksaA01 (A:49-305)
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Clan
:
GPCR_A
(90)
Family
:
7tm_1
(47)
Homo sapiens (Human)
(25)
1a
7tm_1-2ksaA01
A:49-305
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Asym.Unit (525 KB)
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