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2KRR
Asym. Unit
Info
Asym.Unit (915 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RBD1,2 DOMAINS FROM HUMAN NUCLEOLIN
Authors
:
N. Arumugam, C. Miller, J. Maliekal, P. J. Bates, J. O. Trent, A. N. Lane
Date
:
22 Dec 09 (Deposition) - 05 May 10 (Release) - 05 May 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Acetylation, Cytoplasm, Dna-Binding, Methylation, Nucleus, Phosphoprotein, Polymorphism, Rna-Binding, Nuclear Protein
(Keyword Search:
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Reference
:
S. Arumugam, M. C. Miller, J. Maliekal, P. J. Bates, J. O. Trent, A. N. Lane
Solution Structure Of The Rbd1, 2 Domains From Human Nucleolin.
J. Biomol. Nmr V. 47 79 2010
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RRM (A:8-84|A:94-167|A:168-168|A:172-17...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
NUCL_HUMAN
307-383
393-466
486-560
572-647
4
A:8-84
A:94-167
A:168-168
A:172-173
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Exons
(7, 7)
Info
All Exons
Exon 1.10 (A:1-1)
Exon 1.11 (A:1-48)
Exon 1.12a (A:48-90)
Exon 1.12c (A:90-131)
Exon 1.13a (A:131-167)
Exon 1.15 (A:168-170)
Exon 1.16 (A:171-174)
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All Exon Boundaries
1: Boundary 1.9a/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12a
4: Boundary 1.12a/1.12c
5: Boundary 1.12c/1.13a
6: Boundary 1.13a/1.14c
7: Boundary 1.14c/1.15
8: Boundary 1.15/1.16
9: Boundary 1.16/1.17b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000322723
2a
ENSE00001889007
chr2:
232329305-232329047
259
NUCL_HUMAN
1-6
6
0
-
-
1.5a
ENST00000322723
5a
ENSE00001695115
chr2:
232328027-232327911
117
NUCL_HUMAN
7-45
39
0
-
-
1.8f
ENST00000322723
8f
ENSE00001263950
chr2:
232326728-232326251
478
NUCL_HUMAN
46-205
160
0
-
-
1.9a
ENST00000322723
9a
ENSE00000922539
chr2:
232325577-232325380
198
NUCL_HUMAN
205-271
67
0
-
-
1.10
ENST00000322723
10
ENSE00000922540
chr2:
232325275-232325189
87
NUCL_HUMAN
271-300
30
1
A:1-1
1
1.11
ENST00000322723
11
ENSE00000922541
chr2:
232325004-232324863
142
NUCL_HUMAN
300-347
48
1
A:1-48
48
1.12a
ENST00000322723
12a
ENSE00000843938
chr2:
232323836-232323712
125
NUCL_HUMAN
347-389
43
1
A:48-90
43
1.12c
ENST00000322723
12c
ENSE00001263982
chr2:
232323100-232322977
124
NUCL_HUMAN
389-430
42
1
A:90-131
42
1.13a
ENST00000322723
13a
ENSE00000786685
chr2:
232322511-232322354
158
NUCL_HUMAN
430-483
54
1
A:131-167
37
1.14c
ENST00000322723
14c
ENSE00000786684
chr2:
232321835-232321712
124
NUCL_HUMAN
483-524
42
0
-
-
1.15
ENST00000322723
15
ENSE00000786683
chr2:
232321475-232321342
134
NUCL_HUMAN
524-569
46
1
A:168-170
3
1.16
ENST00000322723
16
ENSE00000786682
chr2:
232320847-232320721
127
NUCL_HUMAN
569-611
43
1
A:171-174
4
1.17b
ENST00000322723
17b
ENSE00000786681
chr2:
232320335-232320112
224
NUCL_HUMAN
611-686
76
0
-
-
1.18c
ENST00000322723
18c
ENSE00001918315
chr2:
232319978-232318242
1737
NUCL_HUMAN
686-710
25
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2krra1 (A:1-85)
1b: SCOP_d2krra2 (A:86-174)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Nucleolin
(5)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2krra1
A:1-85
1b
d2krra2
A:86-174
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CATH Domains
(0, 0)
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RRM_1_2krrA01 (A:96-161)
1b: PFAM_RRM_1_2krrA02 (A:96-161)
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-2krrA01
A:96-161
1b
RRM_1-2krrA02
A:96-161
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Chain A
Asymmetric Unit 1
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