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2KN7
Asym. Unit
Info
Asym.Unit (1013 KB)
Biol.Unit 1 (52 KB)
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Models
(20 )
Title
:
STRUCTURE OF THE XPF-SINGLE STRAND DNA COMPLEX
Authors
:
D. Das, G. E. Folkers, M. Van Dijk, N. G. J. Jaspers, J. H. J. Hoeijmakers R. Kaptein, R. Boelens
Date
:
16 Aug 09 (Deposition) - 04 Aug 10 (Release) - 04 Jul 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C,D (20 x)
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ner, Xpf/Ercc1, Hhh, Protein-Ssdna Complex, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Das, G. E. Folkers, M. Van Dijk, N. G. J. Jaspers, J. H. J. Hoeijmakers, R. Kaptein, R. Boelens
The Structure Of The Xpf-Ssdna Complex Underscores The Distinct Roles Of The Xpf And Ercc1 Helix- Hairpin-Helix Domains In Ss/Ds Dna Recognition
Structure V. 20 667 2012
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_057479 (A128D, chain A/D, )
2: VAR_019201 (I141V, chain A/D, )
3: VAR_013408 (E143G, chain A/D, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_057479
A
860
D
XPF_HUMAN
Polymorphism
4986933
A
D
A
28
128
D
2
UniProt
VAR_019201
I
873
V
XPF_HUMAN
Polymorphism
2020957
A
D
I
41
141
V
3
UniProt
VAR_013408
E
875
G
XPF_HUMAN
Polymorphism
1800124
A
D
E
43
143
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(1, 2)
Info
All Exons
Exon 1.13c (A:10-76 | D:110-176)
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All Exon Boundaries
1: Boundary 1.12/1.13c
2: Boundary 1.13c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000311895
1a
ENSE00001307513
chr16:
14014014-14014229
216
XPF_HUMAN
1-69
69
0
-
-
1.2
ENST00000311895
2
ENSE00001203019
chr16:
14015888-14016068
181
XPF_HUMAN
70-130
61
0
-
-
1.3
ENST00000311895
3
ENSE00001203014
chr16:
14020418-14020613
196
XPF_HUMAN
130-195
66
0
-
-
1.4
ENST00000311895
4
ENSE00001203009
chr16:
14021885-14022092
208
XPF_HUMAN
195-264
70
0
-
-
1.5
ENST00000311895
5
ENSE00001203003
chr16:
14024567-14024747
181
XPF_HUMAN
265-325
61
0
-
-
1.6b
ENST00000311895
6b
ENSE00001202996
chr16:
14026014-14026142
129
XPF_HUMAN
325-368
44
0
-
-
1.8
ENST00000311895
8
ENSE00001202989
chr16:
14028049-14028159
111
XPF_HUMAN
368-405
38
0
-
-
1.9a
ENST00000311895
9a
ENSE00001504946
chr16:
14029003-14029600
598
XPF_HUMAN
405-604
200
0
-
-
1.10b
ENST00000311895
10b
ENSE00001202976
chr16:
14031623-14031715
93
XPF_HUMAN
604-635
32
0
-
-
1.12
ENST00000311895
12
ENSE00001202971
chr16:
14038580-14038692
113
XPF_HUMAN
635-673
39
0
-
-
1.13c
ENST00000311895
13c
ENSE00001203025
chr16:
14041471-14046205
4735
XPF_HUMAN
673-916
244
2
A:10-76
D:110-176
67
67
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2kn7a_ (A:)
1b: SCOP_d2kn7d_ (D:)
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
RuvA domain 2-like
(26)
Family
:
Hef domain-like
(9)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2kn7a_
A:
1b
d2kn7d_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Atom Selection
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Protein
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Chain D
Asymmetric Unit 1
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Asym.Unit (1013 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
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