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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE NUCLEOTIDE BINDING DOMAIN OF THE HUMAN MENKES PROTEIN IN THE ATP-BOUND FORM
Authors
:
L. Banci, I. Bertini, F. Cantini, S. Inagaki, M. Migliardi, A. Rosato
Date
:
05 Aug 09 (Deposition) - 01 Dec 09 (Release) - 01 Dec 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Atp7A, Menkes, Nmr, Atpase, Nucleotide Binding Protein, Alternative Splicing, Atp-Binding, Cell Membrane, Copper, Copper Transport, Cytoplasm, Disease Mutation, Endoplasmic Reticulum, Glycoprotein, Golgi Apparatus, Hydrolase, Ion Transport, Magnesium, Membrane, Metal-Binding, Nucleotide- Binding, Phosphoprotein, Polymorphism, Transmembrane, Transport
(Keyword Search:
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Reference
:
L. Banci, I. Bertini, F. Cantini, S. Inagaki, M. Migliardi, A. Rosato
The Binding Mode Of Atp Revealed By The Solution Structure Of The N-Domain Of Human Atp7A.
J. Biol. Chem. 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:1081 , HIS A:1086 , PRO A:1087 , LEU A:1088 , GLY A:1089 , GLY A:1116 , GLY A:1118 , ILE A:1182 , GLY A:1183 , ASN A:1184 , VAL A:1214
BINDING SITE FOR RESIDUE ATP A 1232
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_068831 (F1048I, chain A, )
2: VAR_023270 (L1100P, chain A, )
3: VAR_023271 (G1118D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068831
T
1048
I
ATP7A_HUMAN
Disease (MNKD)
---
A
F
1048
I
2
UniProt
VAR_023270
L
1100
P
ATP7A_HUMAN
Disease (MNKD)
---
A
L
1100
P
3
UniProt
VAR_023271
G
1118
D
ATP7A_HUMAN
Disease (MNKD)
---
A
G
1118
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.20 (A:1047-1098)
Exon 1.21 (A:1099-1171)
Exon 1.22b (A:1171-1220)
Exon 1.24 (A:1220-1231)
View:
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All Exon Boundaries
1: Boundary 1.19/1.20
2: Boundary 1.20/1.21
3: Boundary 1.21/1.22b
4: Boundary 1.22b/1.24
5: Boundary 1.24/1.25
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000341514
1b
ENSE00001863720
X:77166199-77166332
134
ATP7A_HUMAN
-
0
0
-
-
1.5b
ENST00000341514
5b
ENSE00002166326
X:77227118-77227258
141
ATP7A_HUMAN
1-40
40
0
-
-
1.6b
ENST00000341514
6b
ENSE00001636041
X:77243738-77244227
490
ATP7A_HUMAN
41-204
164
0
-
-
1.7
ENST00000341514
7
ENSE00002161973
X:77244729-77245454
726
ATP7A_HUMAN
204-446
243
0
-
-
1.8
ENST00000341514
8
ENSE00001712655
X:77253975-77254181
207
ATP7A_HUMAN
446-515
70
0
-
-
1.9
ENST00000341514
9
ENSE00001656404
X:77258570-77258733
164
ATP7A_HUMAN
515-569
55
0
-
-
1.10
ENST00000341514
10
ENSE00001633722
X:77264599-77264760
162
ATP7A_HUMAN
570-623
54
0
-
-
1.11
ENST00000341514
11
ENSE00001690695
X:77266673-77266749
77
ATP7A_HUMAN
624-649
26
0
-
-
1.12b
ENST00000341514
12b
ENSE00001735395
X:77266946-77267171
226
ATP7A_HUMAN
649-724
76
0
-
-
1.14
ENST00000341514
14
ENSE00001628072
X:77268376-77268609
234
ATP7A_HUMAN
725-802
78
0
-
-
1.15
ENST00000341514
15
ENSE00001765102
X:77270159-77270250
92
ATP7A_HUMAN
803-833
31
0
-
-
1.16
ENST00000341514
16
ENSE00001791031
X:77271251-77271378
128
ATP7A_HUMAN
833-876
44
0
-
-
1.17
ENST00000341514
17
ENSE00001694839
X:77275741-77275895
155
ATP7A_HUMAN
876-927
52
0
-
-
1.18
ENST00000341514
18
ENSE00001625459
X:77276442-77276576
135
ATP7A_HUMAN
928-972
45
0
-
-
1.19
ENST00000341514
19
ENSE00001594340
X:77284747-77284941
195
ATP7A_HUMAN
973-1037
65
0
-
-
1.20
ENST00000341514
20
ENSE00001760012
X:77286898-77287080
183
ATP7A_HUMAN
1038-1098
61
1
A:1047-1098
52
1.21
ENST00000341514
21
ENSE00001673903
X:77289103-77289319
217
ATP7A_HUMAN
1099-1171
73
1
A:1099-1171
73
1.22b
ENST00000341514
22b
ENSE00001683584
X:77294334-77294480
147
ATP7A_HUMAN
1171-1220
50
1
A:1171-1220
50
1.24
ENST00000341514
24
ENSE00001729880
X:77296089-77296231
143
ATP7A_HUMAN
1220-1267
48
1
A:1220-1231
12
1.25
ENST00000341514
25
ENSE00001626594
X:77298083-77298286
204
ATP7A_HUMAN
1268-1335
68
0
-
-
1.26
ENST00000341514
26
ENSE00001621294
X:77298815-77298932
118
ATP7A_HUMAN
1336-1375
40
0
-
-
1.27a
ENST00000341514
27a
ENSE00001671536
X:77300967-77301069
103
ATP7A_HUMAN
1375-1409
35
0
-
-
1.28
ENST00000341514
28
ENSE00001091570
X:77301791-77305892
4102
ATP7A_HUMAN
1409-1500
92
0
-
-
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SCOP Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hydrolase_2kmxA01 (A:1051-1231)
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Clan
:
HAD
(186)
Family
:
Hydrolase
(64)
Homo sapiens (Human)
(6)
1a
Hydrolase-2kmxA01
A:1051-1231
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