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2KLJ
Asym. Unit
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Asym.Unit (478 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF GAMMAD-CRYSTALLIN WITH RDC AND SAXS
Authors
:
J. Wang, X. Zuo, P. Yu, I. Byeon, J. Jung, A. M. Gronenborn, Y. Wang
Date
:
06 Jul 09 (Deposition) - 06 Oct 09 (Release) - 07 Apr 10 (Revision)
Method
:
SOLUTION SCATTERING; SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Gammad-Crystallin, 3D Structure, Rdc, Saxs, Cataract, Disease Mutation, Eye Lens Protein, Oxidation, Polymorphism, Sensory Transduction, Vision, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Wang, X. Zuo, P. Yu, I. J. Byeon, J. Jung, X. Wang, M. Dyba, S. Seifert, C. D. Schwieters, J. Qin, A. M. Gronenborn, Y. X. Wang
Determination Of Multicomponent Protein Structures In Solution Using Global Orientation And Shape Restraints.
J. Am. Chem. Soc. V. 131 10507 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_010733 (R15C, chain A, )
2: VAR_034955 (T24S, chain A, )
3: VAR_021145 (T24T, chain A, )
4: VAR_010734 (R37S, chain A, )
5: VAR_064829 (W43R, chain A, )
6: VAR_010735 (R59H, chain A, )
7: VAR_021146 (M102V, chain A, )
8: VAR_034956 (E107A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010733
R
15
C
CRGD_HUMAN
Disease (CTRCT4)
---
A
R
15
C
2
UniProt
VAR_034955
P
24
S
CRGD_HUMAN
Disease (CTRCT4)
28931605
A
T
24
S
3
UniProt
VAR_021145
P
24
T
CRGD_HUMAN
Disease (CTRCT4)
---
A
T
24
T
4
UniProt
VAR_010734
R
37
S
CRGD_HUMAN
Disease (CTRCT4)
---
A
R
37
S
5
UniProt
VAR_064829
W
43
R
CRGD_HUMAN
Disease (CTRCT4)
---
A
W
43
R
6
UniProt
VAR_010735
R
59
H
CRGD_HUMAN
Disease (CTRCT4)
---
A
R
59
H
7
UniProt
VAR_021146
M
102
V
CRGD_HUMAN
Polymorphism
---
A
M
102
V
8
UniProt
VAR_034956
E
107
A
CRGD_HUMAN
Disease (CTRCT4)
---
A
E
107
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CRYSTALLIN_BETA_GAMMA (A:2-40|A:41-83|A:88-128|A:129-171)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRYSTALLIN_BETA_GAMMA
PS50915
Crystallins beta and gamma 'Greek key' motif profile.
CRGD_HUMAN
2-40
41-83
88-128
129-171
4
A:2-40
A:41-83
A:88-128
A:129-171
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-3)
Exon 1.2 (A:4-84)
Exon 1.3 (A:85-174)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264376
1
ENSE00001072759
chr2:
208989225-208989189
37
CRGD_HUMAN
1-3
3
1
A:1-3
3
1.2
ENST00000264376
2
ENSE00001635690
chr2:
208989078-208988836
243
CRGD_HUMAN
4-84
81
1
A:4-84
81
1.3
ENST00000264376
3
ENSE00000796728
chr2:
208986669-208986331
339
CRGD_HUMAN
85-174
90
1
A:85-174
90
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Crystall_2kljA01 (A:89-170)
1b: PFAM_Crystall_2kljA02 (A:89-170)
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Clans
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Organisms
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(
)
Clan
:
gCrystallin
(22)
Family
:
Crystall
(21)
Homo sapiens (Human)
(8)
1a
Crystall-2kljA01
A:89-170
1b
Crystall-2kljA02
A:89-170
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Chain A
Asymmetric Unit 1
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