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2KI6
Asym. Unit
Info
Asym.Unit (3.7 MB)
Biol.Unit 1 (212 KB)
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Models
(18 )
Title
:
THE FGF1-S100A13-C2A HETERO-HEXAMERIC COMPLEX STRUCTURE: A COMPONENT IN THE NON-CLASSICAL PATHWAY FOR FGF1 SECRETION
Authors
:
S. M. Krishna, S. G. Rani, C. Yu
Date
:
28 Apr 09 (Deposition) - 09 Mar 10 (Release) - 19 May 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C,D,E,F (18 x)
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Fgf1-S100A13-C2A Hetero-Hexameric Complex, Fgf1, S100A13, C2A, Calcium, Cell Junction, Cytoplasmic Vesicle, Glycoprotein, Lipoprotein, Membrane, Metal-Binding, Palmitate, Phosphoprotein, Synapse, Transmembrane, Acetylation, Alternative Splicing, Angiogenesis, Developmental Protein, Differentiation, Growth Factor, Heparin-Binding, Mitogen, Polymorphism, Protein Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. K. Mohan, S. G. Rani, C. Yu
The Heterohexameric Complex Structure, A Component In The Non-Classical Pathway For Fibroblast Growth Factor 1 (Fgf1) Secretion.
J. Biol. Chem. V. 285 15464 2010
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: D-LYSINE (DLYa)
1b: D-LYSINE (DLYb)
1c: D-LYSINE (DLYc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DLY
3
Mod. Amino Acid
D-LYSINE
[
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (B:64-87,E:64-87)
2: C2 (A:17-105,F:17-105|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
2
B:64-87
E:64-87
2
C2
PS50004
C2 domain profile.
SYT1_HUMAN
157-245
287-378
2
A:17-105
F:17-105
-
[
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Exons
(8, 16)
Info
All Exons
Exon 1.8b (B:1-35 | E:1-35)
Exon 1.9b (B:35-69 | E:35-69)
Exon 1.10f (B:70-133 | E:70-133)
Exon 2.9j (C:1-51 | D:1-51)
Exon 2.10b (C:52-98 | D:52-98)
Exon 3.9 (A:1-18 | F:1-18)
Exon 3.10b (A:19-74 | F:19-74)
Exon 3.11 (A:75-128 | F:75-128)
View:
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All Exon Boundaries
01: Boundary 1.3/1.8b
02: Boundary 1.8b/1.9b
03: Boundary 1.9b/1.10f
04: Boundary 1.10f/-
05: Boundary 2.9f/2.9j
06: Boundary 2.9j/2.10b
07: Boundary 2.10b/-
08: Boundary 3.8/3.9
09: Boundary 3.9/3.10b
10: Boundary 3.10b/3.11
11: Boundary 3.11/3.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000378046
3
ENSE00001476010
chr5:
142065237-142065079
159
FGF1_HUMAN
-
0
0
-
-
1.8b
ENST00000378046
8b
ENSE00002155500
chr5:
141993726-141993524
203
FGF1_HUMAN
1-57
57
2
B:1-35
E:1-35
35
35
1.9b
ENST00000378046
9b
ENSE00000766692
chr5:
141980370-141980267
104
FGF1_HUMAN
57-91
35
2
B:35-69
E:35-69
35
35
1.10f
ENST00000378046
10f
ENSE00001476009
chr5:
141975049-141972934
2116
FGF1_HUMAN
92-155
64
2
B:70-133
E:70-133
64
64
2.9f
ENST00000392623
9f
ENSE00001512519
chr1:
153599744-153599615
130
S10AD_HUMAN
-
0
0
-
-
2.9j
ENST00000392623
9j
ENSE00002186841
chr1:
153599009-153598796
214
S10AD_HUMAN
1-51
51
2
C:1-51
D:1-51
51
51
2.10b
ENST00000392623
10b
ENSE00001364911
chr1:
153591514-153591280
235
S10AD_HUMAN
52-98
47
2
C:52-98
D:52-98
47
47
3.1
ENST00000393240
1
ENSE00001514587
chr12:
79257773-79258115
343
SYT1_HUMAN
-
0
0
-
-
3.2b
ENST00000393240
2b
ENSE00001514586
chr12:
79258778-79258889
112
SYT1_HUMAN
-
0
0
-
-
3.3
ENST00000393240
3
ENSE00001411176
chr12:
79371579-79371711
133
SYT1_HUMAN
-
0
0
-
-
3.6
ENST00000393240
6
ENSE00001399568
chr12:
79441077-79441142
66
SYT1_HUMAN
-
0
0
-
-
3.7
ENST00000393240
7
ENSE00001164727
chr12:
79611283-79611465
183
SYT1_HUMAN
1-56
56
0
-
-
3.8
ENST00000393240
8
ENSE00001098488
chr12:
79679567-79679751
185
SYT1_HUMAN
56-117
62
0
-
-
3.9
ENST00000393240
9
ENSE00001272133
chr12:
79685788-79685910
123
SYT1_HUMAN
118-158
41
2
A:1-18
F:1-18
18
18
3.10b
ENST00000393240
10b
ENSE00001272119
chr12:
79689849-79690016
168
SYT1_HUMAN
159-214
56
2
A:19-74
F:19-74
56
56
3.11
ENST00000393240
11
ENSE00000910597
chr12:
79693164-79693331
168
SYT1_HUMAN
215-270
56
2
A:75-128
F:75-128
54
54
3.12
ENST00000393240
12
ENSE00001620152
chr12:
79747282-79747399
118
SYT1_HUMAN
271-310
40
0
-
-
3.13
ENST00000393240
13
ENSE00001657879
chr12:
79837853-79837986
134
SYT1_HUMAN
310-354
45
0
-
-
3.14a
ENST00000393240
14a
ENSE00001824637
chr12:
79842698-79844059
1362
SYT1_HUMAN
355-422
68
0
-
-
[
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2ki6c_ (C:)
1b: SCOP_d2ki6d_ (D:)
2a: SCOP_d2ki6b_ (B:)
2b: SCOP_d2ki6e_ (E:)
3a: SCOP_d2ki6a_ (A:)
3b: SCOP_d2ki6f_ (F:)
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Folds
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Superfamilies
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Families
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
automated matches
(65)
Protein domain
:
automated matches
(65)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d2ki6c_
C:
1b
d2ki6d_
D:
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
2a
d2ki6b_
B:
2b
d2ki6e_
E:
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
Synaptotagmin-like (S variant)
(38)
Protein domain
:
Synaptogamin I
(17)
Human (Homo sapiens) [TaxId: 9606]
(10)
3a
d2ki6a_
A:
3b
d2ki6f_
F:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2ki6A00 (A:1-128)
1b: CATH_2ki6F00 (F:1-128)
2a: CATH_2ki6B00 (B:1-133)
2b: CATH_2ki6E00 (E:1-133)
View:
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Classes
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Architectures
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Human (Homo sapiens)
(41)
1a
2ki6A00
A:1-128
1b
2ki6F00
F:1-128
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
2a
2ki6B00
B:1-133
2b
2ki6E00
E:1-133
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_C2_2ki6F01 (F:19-105)
1b: PFAM_C2_2ki6F02 (F:19-105)
2a: PFAM_S_100_2ki6D01 (D:9-52)
2b: PFAM_S_100_2ki6D02 (D:9-52)
3a: PFAM_FGF_2ki6E01 (E:3-126)
3b: PFAM_FGF_2ki6E02 (E:3-126)
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Clans
(
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Families
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(
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Organisms
(
)
(
)
Clan
:
C2
(71)
Family
:
C2
(34)
Homo sapiens (Human)
(15)
1a
C2-2ki6F01
F:19-105
1b
C2-2ki6F02
F:19-105
Clan
:
EF_hand
(270)
Family
:
S_100
(63)
Homo sapiens (Human)
(41)
2a
S_100-2ki6D01
D:9-52
2b
S_100-2ki6D02
D:9-52
Clan
:
Trefoil
(131)
Family
:
FGF
(36)
Homo sapiens (Human)
(34)
3a
FGF-2ki6E01
E:3-126
3b
FGF-2ki6E02
E:3-126
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Atom Selection
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Nucleic
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Sidechain
Hetero
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Protein & NOT Variant
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Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (3.7 MB)
Header - Asym.Unit
Biol.Unit 1 (212 KB)
Header - Biol.Unit 1
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