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2KFB
Asym. Unit
Info
Asym.Unit (942 KB)
Biol.Unit 1 (48 KB)
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Models
(20 )
Title
:
THE STRUCTURE OF THE CATARACT CAUSING P23T MUTANT OF HUMAN GAMMA-D CRYSTALLIN
Authors
:
J. Jung, I. L. Byeon, Y. Wang, J. King, A. M. Gronenborn
Date
:
12 Feb 09 (Deposition) - 28 Jul 09 (Release) - 19 Jun 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Crystallin, Cataract, Protein, Lens, Disease Mutation, Eye Lens Protein, Oxidation, Sensory Transduction, Vision, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Jung, I. J. Byeon, Y. Wang, J. King, A. M. Gronenborn
The Structure Of The Cataract-Causing P23T Mutant Of Human Gammad-Crystallin Exhibits Distinctive Local Conformational And Dynamic Changes.
Biochemistry V. 48 2597 2009
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_010733 (R15C, chain A, )
2: VAR_034955 (T24S, chain A, )
3: VAR_021145 (T24T, chain A, )
4: VAR_010734 (R37S, chain A, )
5: VAR_064829 (W43R, chain A, )
6: VAR_010735 (R59H, chain A, )
7: VAR_021146 (M102V, chain A, )
8: VAR_034956 (E107A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010733
R
15
C
CRGD_HUMAN
Disease (CTRCT4)
---
A
R
15
C
2
UniProt
VAR_034955
P
24
S
CRGD_HUMAN
Disease (CTRCT4)
28931605
A
T
24
S
3
UniProt
VAR_021145
P
24
T
CRGD_HUMAN
Disease (CTRCT4)
---
A
T
24
T
4
UniProt
VAR_010734
R
37
S
CRGD_HUMAN
Disease (CTRCT4)
---
A
R
37
S
5
UniProt
VAR_064829
W
43
R
CRGD_HUMAN
Disease (CTRCT4)
---
A
W
43
R
6
UniProt
VAR_010735
R
59
H
CRGD_HUMAN
Disease (CTRCT4)
---
A
R
59
H
7
UniProt
VAR_021146
M
102
V
CRGD_HUMAN
Polymorphism
---
A
M
102
V
8
UniProt
VAR_034956
E
107
A
CRGD_HUMAN
Disease (CTRCT4)
---
A
E
107
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CRYSTALLIN_BETA_GAMMA (A:2-40|A:41-83|A:88-128|A:129-171)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRYSTALLIN_BETA_GAMMA
PS50915
Crystallins beta and gamma 'Greek key' motif profile.
CRGD_HUMAN
2-40
41-83
88-128
129-171
4
A:2-40
A:41-83
A:88-128
A:129-171
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-3)
Exon 1.2 (A:4-84)
Exon 1.3 (A:85-174)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264376
1
ENSE00001072759
chr2:
208989225-208989189
37
CRGD_HUMAN
1-3
3
1
A:1-3
3
1.2
ENST00000264376
2
ENSE00001635690
chr2:
208989078-208988836
243
CRGD_HUMAN
4-84
81
1
A:4-84
81
1.3
ENST00000264376
3
ENSE00000796728
chr2:
208986669-208986331
339
CRGD_HUMAN
85-174
90
1
A:85-174
90
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2kfba1 (A:1-86)
1b: SCOP_d2kfba2 (A:87-174)
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Class
:
All beta proteins
(24004)
Fold
:
gamma-Crystallin-like
(65)
Superfamily
:
gamma-Crystallin-like
(65)
Family
:
Crystallins/Ca-binding development proteins
(34)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2kfba1
A:1-86
1b
d2kfba2
A:87-174
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2kfbA02 (A:85-174)
1b: CATH_2kfbA01 (A:1-84)
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Gamma-B Crystallin; domain 1
(45)
Homologous Superfamily
:
Crystallins
(39)
Human (Homo sapiens)
(7)
1a
2kfbA02
A:85-174
1b
2kfbA01
A:1-84
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Crystall_2kfbA01 (A:89-170)
1b: PFAM_Crystall_2kfbA02 (A:89-170)
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Clan
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gCrystallin
(22)
Family
:
Crystall
(21)
Homo sapiens (Human)
(8)
1a
Crystall-2kfbA01
A:89-170
1b
Crystall-2kfbA02
A:89-170
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Chain A
Asymmetric Unit 1
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