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2KEF
Asym. Unit
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Asym.Unit (116 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURES OF HUMAN HEPCIDIN AT 325K
Authors
:
J. B. Jordan, L. Poppe, M. Hainu, T. Arvedson, R. Syed, V. Li, H. Kohno, H. Kim, L. P. Miranda, J. Cheetham, B. J. Sasu
Date
:
29 Jan 09 (Deposition) - 23 Jun 09 (Release) - 13 Oct 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Hepcidin, Antibiotic, Antimicrobial, Cleavage On Pair Of Basic Residues, Disease Mutation, Fungicide, Hormone, Secreted
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Jordan, L. Poppe, M. Haniu, T. Arvedson, R. Syed, V. Li, H. Kohno, H. Kim, P. D. Schnier, T. S. Harvey, L. P. Miranda, J. Cheetham, B. J. Sasu
Hepcidin Revisited, Disulfide Connectivity, Dynamics, And Structure.
J. Biol. Chem. V. 284 24155 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_042513 (C11R, chain A, )
2: VAR_026648 (G12D, chain A, )
3: VAR_042514 (C19Y, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042513
C
70
R
HEPC_HUMAN
Disease (HFE2B)
---
A
C
11
R
2
UniProt
VAR_026648
G
71
D
HEPC_HUMAN
Disease (HFE2B)
104894696
A
G
12
D
3
UniProt
VAR_042514
C
78
Y
HEPC_HUMAN
Disease (HFE2B)
---
A
C
19
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
(1, 1)
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Exon 1.3 (A:1-25)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000222304
1
ENSE00000862777
chr19:
35773410-35773570
161
HEPC_HUMAN
1-30
30
0
-
-
1.2
ENST00000222304
2
ENSE00000700274
chr19:
35775692-35775751
60
HEPC_HUMAN
31-50
20
0
-
-
1.3
ENST00000222304
3
ENSE00000862778
chr19:
35775841-35776046
206
HEPC_HUMAN
51-84
34
1
A:1-25
25
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hepcidin_2kefA01 (A:1-25)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
no clan defined [family: Hepcidin]
(4)
Family
:
Hepcidin
(4)
Homo sapiens (Human)
(3)
1a
Hepcidin-2kefA01
A:1-25
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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