PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2KBI
Asym. Unit
Info
Asym.Unit (513 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF THE C-TERMINAL EF-HAND DOMAIN OF HUMAN CARDIAC SODIUM CHANNEL NAV1.5
Authors
:
B. Chagot, F. Potet, J. R. Balser, W. J. Chazin
Date
:
28 Nov 08 (Deposition) - 23 Dec 08 (Release) - 17 Mar 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Protein, Ef-Hand, Sodium Channel, Brugada Syndrome, Cardiomyopathy, Disease Mutation, Glycoprotein, Ion Transport, Ionic Channel, Long Qt Syndrome, Membrane, Phosphoprotein, Polymorphism, Sodium, Sodium Transport, Transmembrane, Transport, Ubl Conjugation, Voltage-Gated Channel, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Chagot, F. Potet, J. R. Balser, W. J. Chazin
Solution Nmr Structure Of The C-Terminal Ef-Hand Domain Of Human Cardiac Sodium Channel Nav1. 5.
J. Biol. Chem. V. 284 6436 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_055212 (V1777M, chain A, )
02: VAR_068339 (T1779M, chain A, )
03: VAR_008959 (E1784K, chain A, )
04: VAR_009938 (S1787N, chain A, )
05: VAR_001580 (D1790G, chain A, )
06: VAR_068475 (D1792N, chain A, )
07: VAR_019123 (Y1795C, chain A, )
08: VAR_019124 (Y1795H, chain A, )
09: VAR_036668 (D1819N, chain A, )
10: VAR_055213 (L1825P, chain A, )
11: VAR_055214 (R1826C, chain A, )
12: VAR_017687 (R1826H, chain A, )
13: VAR_001581 (D1839G, chain A, )
14: VAR_055215 (C1850S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_055212
V
1777
M
SCN5A_HUMAN
Disease (LQT3)
---
A
V
1777
M
02
UniProt
VAR_068339
T
1779
M
SCN5A_HUMAN
Disease (LQT3)
---
A
T
1779
M
03
UniProt
VAR_008959
E
1784
K
SCN5A_HUMAN
Disease (LQT3)
---
A
E
1784
K
04
UniProt
VAR_009938
S
1787
N
SCN5A_HUMAN
Disease (LQT3)
---
A
S
1787
N
05
UniProt
VAR_001580
D
1790
G
SCN5A_HUMAN
Disease (LQT3)
---
A
D
1790
G
06
UniProt
VAR_068475
D
1792
N
SCN5A_HUMAN
Disease (SSS1)
---
A
D
1792
N
07
UniProt
VAR_019123
Y
1795
C
SCN5A_HUMAN
Disease (LQT3)
---
A
Y
1795
C
08
UniProt
VAR_019124
Y
1795
H
SCN5A_HUMAN
Disease (BRGDA1)
---
A
Y
1795
H
09
UniProt
VAR_036668
D
1819
N
SCN5A_HUMAN
Disease (LQT3)
---
A
D
1819
N
10
UniProt
VAR_055213
L
1825
P
SCN5A_HUMAN
Disease (LQT3)
---
A
L
1825
P
11
UniProt
VAR_055214
R
1826
C
SCN5A_HUMAN
Disease (ATFB10)
---
A
R
1826
C
12
UniProt
VAR_017687
R
1826
H
SCN5A_HUMAN
Disease (LQT3)
---
A
R
1826
H
13
UniProt
VAR_001581
D
1839
G
SCN5A_HUMAN
Disease (LQT3)
---
A
D
1839
G
14
UniProt
VAR_055215
C
1850
S
SCN5A_HUMAN
Disease (BRGDA1)
---
A
C
1850
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (513 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2KBI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help