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2K8F
Asym. Unit
Info
Asym.Unit (340 KB)
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Models
(10 )
Title
:
STRUCTURAL BASIS FOR THE REGULATION OF P53 FUNCTION BY P300
Authors
:
Y. Bai, H. Feng, L. M. Jenkins, S. R. Durell, A. Wiodawer, E. Appella
Date
:
08 Sep 08 (Deposition) - 03 Mar 09 (Release) - 03 Mar 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Complex Of P53 And P300, Acetylation, Bromodomain, Cell Cycle, Chromosomal Rearrangement, Citrullination, Disease Mutation, Host-Virus Interaction, Metal-Binding, Methylation, Nucleus, Phosphoprotein, Polymorphism, Transcription, Transcription Regulation, Transferase, Zinc, Zinc-Finger, Activator, Alternative Splicing, Anti-Oncogene, Apoptosis, Covalent Protein-Rna Linkage, Cytoplasm, Dna- Binding, Endoplasmic Reticulum, Glycoprotein, Li-Fraumeni Syndrome, Ubl Conjugation, Transferase/Transcription Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Feng, L. M. Jenkins, S. R. Durell, R. Hayashi, S. J. Mazur, S. Cherry, J. E. Tropea, M. Miller, A. Wlodawer, E. Appella, Y. Bai
Structural Basis For P300 Taz2-P53 Tad1 Binding And Modulation By Phosphorylation.
Structure V. 17 202 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(21, 21)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_044543 (Q5H, chain B, )
02: VAR_044544 (S6L, chain B, )
03: VAR_005851 (D7H, chain B, )
04: VAR_044545 (P8S, chain B, )
05: VAR_044546 (V10I, chain B, )
06: VAR_044547 (E11K, chain B, )
07: VAR_044548 (E11Q, chain B, )
08: VAR_044549 (S15R, chain B, )
09: VAR_044550 (Q16L, chain B, )
10: VAR_044551 (E17D, chain B, )
11: VAR_044552 (K24N, chain B, )
12: VAR_044553 (E28A, chain B, )
13: VAR_044554 (V31I, chain B, )
14: VAR_044555 (S33T, chain B, )
15: VAR_044556 (P34L, chain B, )
16: VAR_005852 (L35F, chain B, )
17: VAR_044557 (P36L, chain B, )
18: VAR_044558 (S37P, chain B, )
19: VAR_044559 (S37T, chain B, )
20: VAR_044560 (A39P, chain B, )
21: VAR_044561 (A39V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_044543
Q
5
H
P53_HUMAN
Unclassified
---
B
Q
5
H
02
UniProt
VAR_044544
S
6
L
P53_HUMAN
Unclassified
---
B
S
6
L
03
UniProt
VAR_005851
D
7
H
P53_HUMAN
Unclassified
---
B
D
7
H
04
UniProt
VAR_044545
P
8
S
P53_HUMAN
Unclassified
---
B
P
8
S
05
UniProt
VAR_044546
V
10
I
P53_HUMAN
Unclassified
---
B
V
10
I
06
UniProt
VAR_044547
E
11
K
P53_HUMAN
Unclassified
---
B
E
11
K
07
UniProt
VAR_044548
E
11
Q
P53_HUMAN
Unclassified
---
B
E
11
Q
08
UniProt
VAR_044549
S
15
R
P53_HUMAN
Unclassified
---
B
S
15
R
09
UniProt
VAR_044550
Q
16
L
P53_HUMAN
Unclassified
---
B
Q
16
L
10
UniProt
VAR_044551
E
17
D
P53_HUMAN
Unclassified
---
B
E
17
D
11
UniProt
VAR_044552
K
24
N
P53_HUMAN
Unclassified
---
B
K
24
N
12
UniProt
VAR_044553
E
28
A
P53_HUMAN
Unclassified
---
B
E
28
A
13
UniProt
VAR_044554
V
31
I
P53_HUMAN
Unclassified
---
B
V
31
I
14
UniProt
VAR_044555
S
33
T
P53_HUMAN
Unclassified
---
B
S
33
T
15
UniProt
VAR_044556
P
34
L
P53_HUMAN
Unclassified
---
B
P
34
L
16
UniProt
VAR_005852
L
35
F
P53_HUMAN
Unclassified
---
B
L
35
F
17
UniProt
VAR_044557
P
36
L
P53_HUMAN
Unclassified
---
B
P
36
L
18
UniProt
VAR_044558
S
37
P
P53_HUMAN
Unclassified
---
B
S
37
P
19
UniProt
VAR_044559
S
37
T
P53_HUMAN
Unclassified
---
B
S
37
T
20
UniProt
VAR_044560
A
39
P
P53_HUMAN
Unclassified
---
B
A
39
P
21
UniProt
VAR_044561
A
39
V
P53_HUMAN
Unclassified
---
B
A
39
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_TAZ (-|A:6-87)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_TAZ
PS50134
Zinc finger TAZ-type profile.
EP300_HUMAN
331-417
1728-1809
1
-
A:6-87
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.31 (A:1-90)
Exon 2.3a (B:1-25)
Exon 2.3d (B:25-32)
Exon 2.4b (B:33-39)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.30/1.31
2: Boundary 1.31/-
3: Boundary 2.1a/2.3a
4: Boundary 2.3a/2.3d
5: Boundary 2.3d/2.4b
6: Boundary 2.4b/2.5d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263253
1
ENSE00001343011
chr22:
41487790-41489102
1313
EP300_HUMAN
1-32
32
0
-
-
1.2
ENST00000263253
2
ENSE00000654991
chr22:
41513191-41513825
635
EP300_HUMAN
32-243
212
0
-
-
1.3
ENST00000263253
3
ENSE00000655017
chr22:
41521868-41522044
177
EP300_HUMAN
244-302
59
0
-
-
1.4
ENST00000263253
4
ENSE00000655023
chr22:
41523491-41523752
262
EP300_HUMAN
303-390
88
0
-
-
1.5
ENST00000263253
5
ENSE00000655024
chr22:
41525894-41526007
114
EP300_HUMAN
390-428
39
0
-
-
1.6
ENST00000263253
6
ENSE00001336414
chr22:
41527392-41527637
246
EP300_HUMAN
428-510
83
0
-
-
1.7
ENST00000263253
7
ENSE00000655043
chr22:
41531817-41531910
94
EP300_HUMAN
510-541
32
0
-
-
1.8
ENST00000263253
8
ENSE00000655048
chr22:
41533657-41533794
138
EP300_HUMAN
541-587
47
0
-
-
1.9
ENST00000263253
9
ENSE00000655049
chr22:
41536144-41536261
118
EP300_HUMAN
587-626
40
0
-
-
1.10
ENST00000263253
10
ENSE00000655078
chr22:
41537052-41537226
175
EP300_HUMAN
627-685
59
0
-
-
1.11
ENST00000263253
11
ENSE00000655093
chr22:
41542743-41542820
78
EP300_HUMAN
685-711
27
0
-
-
1.12
ENST00000263253
12
ENSE00000655110
chr22:
41543841-41543950
110
EP300_HUMAN
711-747
37
0
-
-
1.13
ENST00000263253
13
ENSE00001336303
chr22:
41545042-41545179
138
EP300_HUMAN
748-793
46
0
-
-
1.14
ENST00000263253
14
ENSE00000655148
chr22:
41545765-41546202
438
EP300_HUMAN
794-939
146
0
-
-
1.15
ENST00000263253
15
ENSE00000880436
chr22:
41547837-41548016
180
EP300_HUMAN
940-999
60
0
-
-
1.16
ENST00000263253
16
ENSE00000880437
chr22:
41548210-41548354
145
EP300_HUMAN
1000-1048
49
0
-
-
1.17
ENST00000263253
17
ENSE00000880438
chr22:
41550999-41551117
119
EP300_HUMAN
1048-1087
40
0
-
-
1.18
ENST00000263253
18
ENSE00000655228
chr22:
41553173-41553412
240
EP300_HUMAN
1088-1167
80
0
-
-
1.19
ENST00000263253
19
ENSE00000655266
chr22:
41554416-41554504
89
EP300_HUMAN
1168-1197
30
0
-
-
1.20
ENST00000263253
20
ENSE00001302097
chr22:
41556646-41556726
81
EP300_HUMAN
1197-1224
28
0
-
-
1.21
ENST00000263253
21
ENSE00000655295
chr22:
41558727-41558783
57
EP300_HUMAN
1224-1243
20
0
-
-
1.22
ENST00000263253
22
ENSE00001307142
chr22:
41560057-41560134
78
EP300_HUMAN
1243-1269
27
0
-
-
1.23
ENST00000263253
23
ENSE00000655323
chr22:
41562603-41562670
68
EP300_HUMAN
1269-1292
24
0
-
-
1.24
ENST00000263253
24
ENSE00000655331
chr22:
41564453-41564603
151
EP300_HUMAN
1292-1342
51
0
-
-
1.25
ENST00000263253
25
ENSE00000655352
chr22:
41564725-41564871
147
EP300_HUMAN
1342-1391
50
0
-
-
1.26
ENST00000263253
26
ENSE00001730907
chr22:
41565507-41565620
114
EP300_HUMAN
1391-1429
39
0
-
-
1.27
ENST00000263253
27
ENSE00000655374
chr22:
41566410-41566575
166
EP300_HUMAN
1429-1484
56
0
-
-
1.28
ENST00000263253
28
ENSE00000655406
chr22:
41568503-41568667
165
EP300_HUMAN
1485-1539
55
0
-
-
1.29
ENST00000263253
29
ENSE00000655428
chr22:
41569627-41569788
162
EP300_HUMAN
1540-1593
54
0
-
-
1.30
ENST00000263253
30
ENSE00000655442
chr22:
41572251-41572532
282
EP300_HUMAN
1594-1687
94
0
-
-
1.31
ENST00000263253
31
ENSE00001177198
chr22:
41572777-41576081
3305
EP300_HUMAN
1688-2414
727
1
A:1-90
90
2.1a
ENST00000269305
1a
ENSE00001146308
chr17:
7590856-7590695
162
P53_HUMAN
-
0
0
-
-
2.3a
ENST00000269305
3a
ENSE00002194362
chr17:
7579940-7579839
102
P53_HUMAN
1-25
25
1
B:1-25
25
2.3d
ENST00000269305
3d
ENSE00001710434
chr17:
7579721-7579700
22
P53_HUMAN
25-32
8
1
B:25-32
8
2.4b
ENST00000269305
4b
ENSE00001718735
chr17:
7579590-7579312
279
P53_HUMAN
33-125
93
1
B:33-39
7
2.5d
ENST00000269305
5d
ENSE00001255919
chr17:
7578554-7578371
184
P53_HUMAN
126-187
62
0
-
-
2.6a
ENST00000269305
6a
ENSE00001255912
chr17:
7578289-7578177
113
P53_HUMAN
187-224
38
0
-
-
2.7b
ENST00000269305
7b
ENSE00001665758
chr17:
7577608-7577499
110
P53_HUMAN
225-261
37
0
-
-
2.8
ENST00000269305
8
ENSE00001789298
chr17:
7577155-7577019
137
P53_HUMAN
261-307
47
0
-
-
2.9
ENST00000269305
9
ENSE00002149110
chr17:
7576926-7576853
74
P53_HUMAN
307-331
25
0
-
-
2.11
ENST00000269305
11
ENSE00001728015
chr17:
7574033-7573927
107
P53_HUMAN
332-367
36
0
-
-
2.12d
ENST00000269305
12d
ENSE00001757276
chr17:
7573008-7571720
1289
P53_HUMAN
367-393
27
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2k8fa_ (A:)
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Folds
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
TAZ domain
(11)
Superfamily
:
TAZ domain
(11)
Family
:
TAZ domain
(11)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2k8fa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2k8fA00 (A:1-90)
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(
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
CREB-binding Protein; Chain A
(10)
Homologous Superfamily
:
CREB-binding Protein; Chain A
(10)
Human (Homo sapiens)
(5)
1a
2k8fA00
A:1-90
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_P53_TAD_2k8fB01 (B:5-29)
2a: PFAM_zf_TAZ_2k8fA01 (A:11-84)
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Families
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(
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Organisms
(
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(
)
Clan
:
no clan defined [family: P53_TAD]
(6)
Family
:
P53_TAD
(6)
Homo sapiens (Human)
(6)
1a
P53_TAD-2k8fB01
B:5-29
Clan
:
no clan defined [family: zf-TAZ]
(13)
Family
:
zf-TAZ
(13)
Homo sapiens (Human)
(8)
2a
zf-TAZ-2k8fA01
A:11-84
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