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2K7W
Asym. Unit
Info
Asym.Unit (758 KB)
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Models
(20 )
Title
:
BAX ACTIVATION IS INITIATED AT A NOVEL INTERACTION SITE
Authors
:
E. Gavathiotis, M. Suzuki, M. L. Davis, K. Pitter, G. H. Bird, S. G. Katz, H. C. Tu, H. Kim, E. H. Cheng, N. Tjandra, L. D. Walensky
Date
:
27 Aug 08 (Deposition) - 21 Oct 08 (Release) - 22 Sep 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Bax, Bim, Bh3, Bcl-2, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Gavathiotis, M. Suzuki, M. L. Davis, K. Pitter, G. H. Bird, S. G. Katz, H. C. Tu, H. Kim, E. H. Cheng, N. Tjandra, L. D. Walensky
Bax Activation Is Initiated At A Novel Interaction Site.
Nature V. 455 1076 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_013575 (G11E, chain A, )
2: VAR_047053 (G39R, chain A, )
3: VAR_007809 (G67R, chain A, )
4: VAR_013576 (G108V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013575
G
11
E
BAX_HUMAN
Unclassified
---
A
G
11
E
2
UniProt
VAR_047053
G
39
R
BAX_HUMAN
Polymorphism
36017265
A
G
39
R
3
UniProt
VAR_007809
G
67
R
BAX_HUMAN
Unclassified
---
A
G
67
R
4
UniProt
VAR_013576
G
108
V
BAX_HUMAN
Unclassified
---
A
G
108
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: BH3 (A:59-73)
2: BCL2_FAMILY (A:63-160)
3: BH1 (A:99-118)
4: BH2 (A:151-162)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
BAX_HUMAN
59-73
1
A:59-73
2
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
BAX_HUMAN
63-160
1
A:63-160
3
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
BAX_HUMAN
99-118
1
A:99-118
4
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
BAX_HUMAN
151-162
1
A:151-162
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Exons
(7, 7)
Info
All Exons
Exon 1.1b (A:1-12)
Exon 1.1f (A:12-29)
Exon 1.1h (A:29-78)
Exon 1.2c (A:78-123)
Exon 1.4b (A:124-158)
Exon 1.4m (A:159-192)
Exon 2.10b (B:145-164)
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.1f
3: Boundary 1.1f/1.1h
4: Boundary 1.1h/1.2c
5: Boundary 1.2c/1.4b
6: Boundary 1.4b/1.4m
7: Boundary 1.4m/-
8: Boundary 2.4d/2.10b
9: Boundary 2.10b/2.14f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000345358
1b
ENSE00001558844
chr19:
49458134-49458219
86
BAX_HUMAN
1-12
12
1
A:1-12
12
1.1f
ENST00000345358
1f
ENSE00000853382
chr19:
49458805-49458856
52
BAX_HUMAN
12-29
18
1
A:12-29
18
1.1h
ENST00000345358
1h
ENSE00001704034
chr19:
49458944-49459090
147
BAX_HUMAN
29-78
50
1
A:29-78
50
1.2c
ENST00000345358
2c
ENSE00001678231
chr19:
49459455-49459590
136
BAX_HUMAN
78-123
46
1
A:78-123
46
1.4b
ENST00000345358
4b
ENSE00001654505
chr19:
49464067-49464171
105
BAX_HUMAN
124-158
35
1
A:124-158
35
1.4m
ENST00000345358
4m
ENSE00001636776
chr19:
49464789-49465055
267
BAX_HUMAN
159-192
34
1
A:159-192
34
2.2b
ENST00000393256
2b
ENSE00001830376
chr2:
111878506-111878765
260
B2L11_HUMAN
-
0
0
-
-
2.4d
ENST00000393256
4d
ENSE00001008808
chr2:
111881310-111881716
407
B2L11_HUMAN
1-132
132
0
-
-
2.10b
ENST00000393256
10b
ENSE00001756661
chr2:
111907621-111907724
104
B2L11_HUMAN
132-166
35
1
B:145-164
20
2.14f
ENST00000393256
14f
ENSE00001924953
chr2:
111921710-111924587
2878
B2L11_HUMAN
167-198
32
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2k7wa_ (A:)
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Classes
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Folds
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
Proapoptotic molecule Bax
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2k7wa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2k7wA00 (A:1-192)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Apoptosis Regulator Bcl-x
(29)
Homologous Superfamily
:
Apoptosis Regulator Bcl-x
(29)
Human (Homo sapiens)
(19)
1a
2k7wA00
A:1-192
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Bcl_2_2k7wA01 (A:63-158)
2a: PFAM_Bclx_interact_2k7wB01 (B:145-164)
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Clans
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)
(
)
Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
1a
Bcl-2-2k7wA01
A:63-158
Clan
:
no clan defined [family: Bclx_interact]
(9)
Family
:
Bclx_interact
(9)
Homo sapiens (Human)
(8)
2a
Bclx_interact-2k7wB01
B:145-164
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Asymmetric Unit 1
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