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2K6G
Asym. Unit
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Asym.Unit (687 KB)
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Models
(24 )
Title
:
SOLUTION STRUCTURE OF THE DNA BINDING BRCT DOMAIN FROM THE LARGE SUBUNIT OF HUMAN REPLICATION FACTOR C
Authors
:
M. Kobayashi, G. Siegal, E. Ab, A. M. J. J. Bonvin
Date
:
09 Jul 08 (Deposition) - 22 Sep 09 (Release) - 22 Sep 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (24 x)
Keywords
:
Protein, Brct, Dna Binding, Replication Factor C, Activator, Alternative Splicing, Atp-Binding, Dna Replication, Dna- Binding, Metal-Binding, Nucleotide-Binding, Nucleus, Phosphoprotein, Polymorphism, Transcription, Transcription Regulation, Zinc, Zinc-Finger, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Kobayashi, E. Ab, A. M. J. J. Bonvin, G. Siegal
Solution Structure Of The Dna Bound Brct Domain From Human Replication Factor C P140
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRCT (A:402-480)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
RFC1_HUMAN
402-480
1
A:402-480
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Exons
(3, 3)
Info
All Exons
Exon 1.14c (A:375-401)
Exon 1.15b (A:402-461)
Exon 1.16 (A:462-483)
View:
Select:
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All Exon Boundaries
1: Boundary 1.12c/1.14c
2: Boundary 1.14c/1.15b
3: Boundary 1.15b/1.16
4: Boundary 1.16/1.17
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000381897
1a
ENSE00001035176
chr4:
39367995-39367859
137
RFC1_HUMAN
1-1
1
0
-
-
1.3b
ENST00000381897
3b
ENSE00001637673
chr4:
39353096-39352968
129
RFC1_HUMAN
2-44
43
0
-
-
1.4
ENST00000381897
4
ENSE00000711542
chr4:
39347096-39347021
76
RFC1_HUMAN
45-70
26
0
-
-
1.5
ENST00000381897
5
ENSE00002051983
chr4:
39344087-39343965
123
RFC1_HUMAN
70-111
42
0
-
-
1.7b
ENST00000381897
7b
ENSE00001767627
chr4:
39329376-39329144
233
RFC1_HUMAN
111-188
78
0
-
-
1.8
ENST00000381897
8
ENSE00001683555
chr4:
39328260-39328183
78
RFC1_HUMAN
189-214
26
0
-
-
1.9a
ENST00000381897
9a
ENSE00001592036
chr4:
39325037-39324960
78
RFC1_HUMAN
215-240
26
0
-
-
1.11b
ENST00000381897
11b
ENSE00001600905
chr4:
39322994-39322907
88
RFC1_HUMAN
241-270
30
0
-
-
1.12c
ENST00000381897
12c
ENSE00001077271
chr4:
39322289-39322003
287
RFC1_HUMAN
270-365
96
0
-
-
1.14c
ENST00000381897
14c
ENSE00001077262
chr4:
39318642-39318535
108
RFC1_HUMAN
366-401
36
1
A:375-401
27
1.15b
ENST00000381897
15b
ENSE00001077269
chr4:
39314551-39314372
180
RFC1_HUMAN
402-461
60
1
A:402-461
60
1.16
ENST00000381897
16
ENSE00001077247
chr4:
39313169-39313065
105
RFC1_HUMAN
462-496
35
1
A:462-483
22
1.17
ENST00000381897
17
ENSE00001077243
chr4:
39310652-39310256
397
RFC1_HUMAN
497-629
133
0
-
-
1.19b
ENST00000381897
19b
ENSE00001490178
chr4:
39308324-39308212
113
RFC1_HUMAN
629-666
38
0
-
-
1.20
ENST00000381897
20
ENSE00001077252
chr4:
39306548-39306434
115
RFC1_HUMAN
667-705
39
0
-
-
1.21c
ENST00000381897
21c
ENSE00001077254
chr4:
39304771-39304680
92
RFC1_HUMAN
705-735
31
0
-
-
1.22
ENST00000381897
22
ENSE00001077276
chr4:
39304494-39304357
138
RFC1_HUMAN
736-781
46
0
-
-
1.23
ENST00000381897
23
ENSE00001077273
chr4:
39304215-39304120
96
RFC1_HUMAN
782-813
32
0
-
-
1.24
ENST00000381897
24
ENSE00001077258
chr4:
39303996-39303898
99
RFC1_HUMAN
814-846
33
0
-
-
1.25b
ENST00000381897
25b
ENSE00001077263
chr4:
39302034-39301880
155
RFC1_HUMAN
847-898
52
0
-
-
1.26
ENST00000381897
26
ENSE00001077264
chr4:
39301758-39301641
118
RFC1_HUMAN
898-937
40
0
-
-
1.28
ENST00000381897
28
ENSE00001077256
chr4:
39297379-39297234
146
RFC1_HUMAN
938-986
49
0
-
-
1.31a
ENST00000381897
31a
ENSE00001077245
chr4:
39293472-39293259
214
RFC1_HUMAN
986-1057
72
0
-
-
1.32a
ENST00000381897
32a
ENSE00001077267
chr4:
39291659-39291468
192
RFC1_HUMAN
1058-1121
64
0
-
-
1.33d
ENST00000381897
33d
ENSE00001077249
chr4:
39290464-39289076
1389
RFC1_HUMAN
1122-1148
27
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_BRCT_2k6gA01 (A:402-479)
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Clan
:
BRCT-like
(38)
Family
:
BRCT
(35)
Homo sapiens (Human)
(27)
1a
BRCT-2k6gA01
A:402-479
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Asym.Unit (687 KB)
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