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2K1P
Asym. Unit
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Asym.Unit (169 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SECOND ZINC FINGER DOMAIN OF ZRANB2/ZNF265
Authors
:
F. E. Loughlin, J. P. Mackay
Date
:
13 Mar 08 (Deposition) - 17 Mar 09 (Release) - 17 Mar 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zinc Finger, Znf265, Rna Binding, Ranbp2, Rbz, Zis, Alternative Splicing, Metal-Binding, Mrna Processing, Mrna Splicing, Nucleus, Phosphoprotein, Polymorphism, Rna- Binding, Zinc-Finger, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. E. Loughlin, R. E. Mansfield, P. M. Vaz, W. Leung, S. Setiyaputra, R. P. Grant, E. S. Chen, R. Gamsjaeger, J. P. Mackay
The Zinc Fingers Of The Sr-Proein Zranb2 Recognize 5'Splice Site-Like Sequences And Constitute A Distinct Class Of Rna Binding Domain
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:71 , THR A:73 , CYS A:74 , MET A:87
BINDING SITE FOR RESIDUE ZN A 96
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_RANBP2_2 (-|A:65-94)
2: ZF_RANBP2_1 (-|A:69-88)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_RANBP2_2
PS50199
Zinc finger RanBP2 type profile.
ZRAB2_HUMAN
9-40
65-94
1
-
A:65-94
2
ZF_RANBP2_1
PS01358
Zinc finger RanBP2-type signature.
ZRAB2_HUMAN
13-34
69-88
1
-
A:69-88
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:63-73 (gaps))
Exon 1.4 (A:73-95)
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1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000370920
1a
ENSE00001954996
chr1:
71546980-71546623
358
ZRAB2_HUMAN
1-19
19
0
-
-
1.2
ENST00000370920
2
ENSE00000903869
chr1:
71544391-71544339
53
ZRAB2_HUMAN
19-37
19
0
-
-
1.3
ENST00000370920
3
ENSE00000903868
chr1:
71544248-71544140
109
ZRAB2_HUMAN
37-73
37
1
A:63-73 (gaps)
25
1.4
ENST00000370920
4
ENSE00000903867
chr1:
71542560-71542478
83
ZRAB2_HUMAN
73-101
29
1
A:73-95
23
1.5
ENST00000370920
5
ENSE00000903866
chr1:
71538231-71538155
77
ZRAB2_HUMAN
101-126
26
0
-
-
1.6
ENST00000370920
6
ENSE00000903865
chr1:
71537938-71537804
135
ZRAB2_HUMAN
127-171
45
0
-
-
1.7
ENST00000370920
7
ENSE00000995752
chr1:
71536679-71536510
170
ZRAB2_HUMAN
172-228
57
0
-
-
1.8b
ENST00000370920
8b
ENSE00000995751
chr1:
71535045-71534959
87
ZRAB2_HUMAN
228-257
30
0
-
-
1.9d
ENST00000370920
9d
ENSE00000903863
chr1:
71532617-71532459
159
ZRAB2_HUMAN
257-310
54
0
-
-
1.10f
ENST00000370920
10f
ENSE00001867543
chr1:
71530820-71528974
1847
ZRAB2_HUMAN
310-330
21
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_RanBP_2k1pA01 (A:65-94)
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)
Clan
:
Zn_Beta_Ribbon
(109)
Family
:
zf-RanBP
(6)
Homo sapiens (Human)
(5)
1a
zf-RanBP-2k1pA01
A:65-94
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