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2K07
Asym. Unit
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Asym.Unit (971 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF HUMAN E2-LIKE UBIQUITIN-FOLD MODIFIER CONJUGATING ENZYME 1 (UFC1). NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR41
Authors
:
G. Liu, A. Eletsky, H. S. Atreya, J. M. Aramini, R. Xiao, T. Acton, G. T. Montelione, T. Szyperski, Northeast Structural Genomics Consortium (Nesg)
Date
:
25 Jan 08 (Deposition) - 19 Feb 08 (Release) - 29 Sep 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ufc1, Ubiquitin Conjugating Enzyme, E2, Ufm1, Polymorphism, Ubl Conjugation Pathway, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Liu, F. Forouhar, A. Eletsky, H. S. Atreya, J. M. Aramini, R. Xiao, Y. J. Huang, M. Abashidze, J. Seetharaman, J. Liu, B. Rost, T. Acton, G. T. Montelione, J. F. Hunt, T. Szyperski
Nmr And X-Ray Structures Of Human E2-Like Ubiquitin-Fold Modifier Conjugating Enzyme 1 (Ufc1) Reveal Structural And Functional Conservation In The Metazoan Ufm1-Uba5-Ufc1 Ubiquination Pathway.
J. Struct. Funct. Genom. V. 10 127 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
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(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_028312 (Y90C, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028312
Y
90
C
UFC1_HUMAN
Polymorphism
17849932
A
Y
90
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 6)
Info
All Exons
Exon 1.3a (A:1-41)
Exon 1.4a (A:42-64)
Exon 1.4c (A:64-85)
Exon 1.5a (A:86-111)
Exon 1.5d (A:111-141)
Exon 1.6b (A:142-167)
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1: Boundary -/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/1.4c
4: Boundary 1.4c/1.5a
5: Boundary 1.5a/1.5d
6: Boundary 1.5d/1.6b
7: Boundary 1.6b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000368003
3a
ENSE00001446105
chr1:
161123542-161123910
369
UFC1_HUMAN
1-41
41
1
A:1-41
41
1.4a
ENST00000368003
4a
ENSE00000958732
chr1:
161126740-161126807
68
UFC1_HUMAN
42-64
23
1
A:42-64
23
1.4c
ENST00000368003
4c
ENSE00001132692
chr1:
161127044-161127107
64
UFC1_HUMAN
64-85
22
1
A:64-85
22
1.5a
ENST00000368003
5a
ENSE00001132687
chr1:
161127407-161127483
77
UFC1_HUMAN
86-111
26
1
A:86-111
26
1.5d
ENST00000368003
5d
ENSE00001132682
chr1:
161127911-161128001
91
UFC1_HUMAN
111-141
31
1
A:111-141
31
1.6b
ENST00000368003
6b
ENSE00001446104
chr1:
161128202-161128646
445
UFC1_HUMAN
142-167
26
1
A:142-167
26
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2k07a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UFC1-like
(5)
Protein domain
:
Ufm1-conjugating enzyme 1, UFC1
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2k07a_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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