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Asym. Unit
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Asym.Unit (313 KB)
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Models
(10 )
Title
:
NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DEK
Authors
:
H. Matsuo, M. Devany
Date
:
02 Nov 07 (Deposition) - 12 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Alpha Helix, Saf/Sap Motif, Dna Binding, Chromosomal Rearrangement, Dna-Binding, Nucleus, Phosphorylation, Proto- Oncogene, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Devany, F. Kappes, K. M. Chen, D. M. Markovitz, H. Matsuo
Solution Nmr Structure Of The N-Terminal Domain Of The Human Dek Protein
Protein Sci. V. 17 205 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_050949 (V63A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050949
V
140
A
DEK_HUMAN
Polymorphism
17336208
A
V
63
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:1-6)
Exon 1.4a (A:6-42)
Exon 1.5b (A:43-74)
Exon 1.6b (A:74-110)
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1: Boundary 1.2b/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.5b
4: Boundary 1.5b/1.6b
5: Boundary 1.6b/1.7a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000397239
1a
ENSE00001819650
chr6:
18265054-18264616
439
DEK_HUMAN
-
0
0
-
-
1.2b
ENST00000397239
2b
ENSE00001642626
chr6:
18264227-18264074
154
DEK_HUMAN
1-49
49
0
-
-
1.3b
ENST00000397239
3b
ENSE00000928752
chr6:
18258636-18258535
102
DEK_HUMAN
49-83
35
1
A:1-6
6
1.4a
ENST00000397239
4a
ENSE00000848162
chr6:
18258293-18258184
110
DEK_HUMAN
83-119
37
1
A:6-42
37
1.5b
ENST00000397239
5b
ENSE00000848161
chr6:
18256686-18256592
95
DEK_HUMAN
120-151
32
1
A:43-74
32
1.6b
ENST00000397239
6b
ENSE00000848160
chr6:
18256082-18255962
121
DEK_HUMAN
151-191
41
1
A:74-110
37
1.7a
ENST00000397239
7a
ENSE00000928751
chr6:
18250070-18249882
189
DEK_HUMAN
192-254
63
0
-
-
1.9a
ENST00000397239
9a
ENSE00001007366
chr6:
18237747-18237612
136
DEK_HUMAN
255-300
46
0
-
-
1.10b
ENST00000397239
10b
ENSE00000848158
chr6:
18236831-18236683
149
DEK_HUMAN
300-349
50
0
-
-
1.11a
ENST00000397239
11a
ENSE00000848157
chr6:
18226473-18226405
69
DEK_HUMAN
350-372
23
0
-
-
1.12d
ENST00000397239
12d
ENSE00001862786
chr6:
18225961-18224099
1863
DEK_HUMAN
373-375
3
0
-
-
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SAP_2jx3A01 (A:72-106)
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Clan
:
HeH
(20)
Family
:
SAP
(10)
Homo sapiens (Human)
(7)
1a
SAP-2jx3A01
A:72-106
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Chain A
Asymmetric Unit 1
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