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2JWO
Asym. Unit
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Asym.Unit (426 KB)
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Models
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Title
:
A PHD FINGER MOTIF IN THE C-TERMINUS OF RAG2 MODULATES RECOMBINATION ACTIVITY
Authors
:
D. Ivanov, S. G. Hyberts, Z. Sun, G. Wagner
Date
:
17 Oct 07 (Deposition) - 06 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
V(D)J Recombination, Phosphoinositide Signaling, Rag2, Phd Domain, Dna Recombination, Dna-Binding, Endonuclease, Hydrolase, Nuclease, Nucleus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Elkin, D. Ivanov, M. Ewalt, C. G. Ferguson, S. G. Hyberts, Z. Y. Sun, G. D. Prestwich, J. Yuan, G. Wagner, M. A. Oettinger, O. P. Gozani
A Phd Finger Motif In The C Terminus Of Rag2 Modulates Recombination Activity.
J. Biol. Chem. V. 280 28701 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
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All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:419 , CYS A:423 , VAL A:425 , HIS A:455 , CYS A:458
BINDING SITE FOR RESIDUE ZN A 488
2
AC2
SOFTWARE
CYS A:446 , HIS A:452 , CYS A:478 , HIS A:481
BINDING SITE FOR RESIDUE ZN A 489
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Exons
(1, 1)
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Exon 1.3b (A:406-487 (gaps))
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1: Boundary 1.2/1.3b
2: Boundary 1.3b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000044031
1a
ENSMUSE00000230550
chr2:
101464875-101465027
153
RAG2_MOUSE
-
0
0
-
-
1.2
ENSMUST00000044031
2
ENSMUSE00000230542
chr2:
101468294-101468356
63
RAG2_MOUSE
-
0
0
-
-
1.3b
ENSMUST00000044031
3b
ENSMUSE00000230533
chr2:
101469479-101472685
3207
RAG2_MOUSE
1-536
536
1
A:406-487 (gaps)
115
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SCOP Domains
(1, 1)
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1a: SCOP_d2jwoa1 (A:414-487)
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Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
PHD domain
(30)
Protein domain
:
V(D)J recombination-activating protein 2, Rag2
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d2jwoa1
A:414-487
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CATH Domains
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Pfam Domains
(1, 1)
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1a: PFAM_RAG2_PHD_2jwoA01 (A:414-487)
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Clan
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zf-FYVE-PHD
(57)
Family
:
RAG2_PHD
(7)
Mus musculus (Mouse)
(7)
1a
RAG2_PHD-2jwoA01
A:414-487
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Chain A
Asymmetric Unit 1
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