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Asym. Unit
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Asym.Unit (412 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF CATALYTIC DOMAIN OF YDCP2
Authors
:
M. Deshmukh, J. Gross
Date
:
16 Sep 07 (Deposition) - 04 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Dcp2, Mrna Decay, Decapping, Cytoplasm, Hydrolase, Manganese, Metal-Binding, Mrna Processing, Nonsense- Mediated Mrna Decay, Nucleus, Phosphorylation, Rna-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. V. Deshmukh, B. N. Jones, D. U. Quang-Dang, J. Flinders, S. N. Floor, C. Kim, J. Jemielity, M. Kalek, E. Darzynkiewicz, J. D. Gross
Mrna Decapping Is Promoted By An Rna-Binding Channel In Dcp2.
Mol. Cell V. 29 324 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_DCP2_YEAST_001 (V188A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DCP2_YEAST_001
*
V
188
A
DCP2_YEAST
---
---
A
V
188
A
* ID not provided by source
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
(2, 2)
Info
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1: NUDIX (A:101-228)
2: NUDIX_BOX (A:134-155)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
DCP2_YEAST
101-228
1
A:101-228
2
NUDIX_BOX
PS00893
Nudix box signature.
DCP2_YEAST
134-155
1
A:134-155
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Exons
(1, 1)
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Exon 1.1 (A:100-245)
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1: Boundary -/1.1
2: Boundary 1.1/-
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YNL118C
1
YNL118C.1
XIV:405566-402654
2913
DCP2_YEAST
1-970
970
1
A:100-245
146
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SCOP Domains
(1, 1)
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1a: SCOP_d2jvba_ (A:)
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Class
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Alpha and beta proteins (a+b)
(23004)
Fold
:
Nudix
(141)
Superfamily
:
Nudix
(141)
Family
:
automated matches
(20)
Protein domain
:
automated matches
(20)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(4)
1a
d2jvba_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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1a: PFAM_NUDIX_2jvbA01 (A:104-229)
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Clan
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NUDIX
(85)
Family
:
NUDIX
(78)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
NUDIX-2jvbA01
A:104-229
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