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2JU0
Asym. Unit
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Asym.Unit (931 KB)
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Models
(15 )
Title
:
STRUCTURE OF YEAST FREQUENIN BOUND TO PDTINS 4-KINASE
Authors
:
J. Ames
Date
:
11 Aug 07 (Deposition) - 28 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (15 x)
Keywords
:
Ef-Hand, Calcium, Ptdins 4-Kinase, Frequenin, Yeast, Lipoprotein, Membrane, Myristate, Nucleus, Phosphorylation, Transferase, Metal Binding Protein/Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Strahl, I. G. Huttner, J. D. Lusin, M. Osawa, D. King, J. Thorner, J. B. Ames
Structural Insights Into Activation Of Phosphatidylinositol 4-Kinase (Pik1) By Yeast Frequenin (Frq1).
J. Biol. Chem. V. 282 30949 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
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Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:72 , ASP A:73 , LYS A:74 , ASP A:75 , ASN A:76 , ASN A:77
BINDING SITE FOR RESIDUE CA A 500
2
AC2
SOFTWARE
TYR A:108 , ASP A:109 , TYR A:115 , ILE A:116 , THR A:117
BINDING SITE FOR RESIDUE CA A 501
3
AC3
SOFTWARE
ASP A:157 , ASN A:159
BINDING SITE FOR RESIDUE CA A 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:60-95|A:96-131|A:144-177)
2: EF_HAND_1 (A:109-121|A:157-169)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
NCS1_YEAST
60-95
96-131
144-179
3
A:60-95
A:96-131
A:144-177
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
NCS1_YEAST
109-121
157-169
2
A:109-121
A:157-169
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (A:3-177)
Exon 2.1 (B:121-172)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR373W
1
YDR373W.1
IV:1222752-1223324
573
NCS1_YEAST
1-190
190
1
A:3-177
175
2.1
YNL267W
1
YNL267W.1
XIV:140879-144079
3201
PIK1_YEAST
1-1066
1066
1
B:121-172
52
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ju0a_ (A:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Frequenin (neuronal calcium sensor 1)
(5)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d2ju0a_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ju0A01 (A:12-96)
1b: CATH_2ju0A02 (A:97-177)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Baker's yeast (Saccharomyces cerevisiae)
(8)
1a
2ju0A01
A:12-96
1b
2ju0A02
A:97-177
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Pfam Domains
(3, 5)
Info
all PFAM domains
1a: PFAM_efhand_2ju0A01 (A:148-174)
1b: PFAM_efhand_2ju0A02 (A:148-174)
1c: PFAM_efhand_2ju0A03 (A:148-174)
2a: PFAM_PI3Ka_2ju0B01 (B:121-142)
3a: PFAM_Pik1_2ju0B02 (B:122-171)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
EF_hand
(270)
Family
:
efhand
(70)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
efhand-2ju0A01
A:148-174
1b
efhand-2ju0A02
A:148-174
1c
efhand-2ju0A03
A:148-174
Clan
:
TPR
(230)
Family
:
PI3Ka
(41)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
2a
PI3Ka-2ju0B01
B:121-142
Clan
:
no clan defined [family: Pik1]
(1)
Family
:
Pik1
(1)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
3a
Pik1-2ju0B02
B:122-171
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