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2JT0
Asym. Unit
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Asym.Unit (422 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF F104W CARDIAC TROPONIN C
Authors
:
X. Wang, P. Mercier, P. -J. Letourneau, B. D. Sykes
Date
:
17 Jul 07 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Ef-Hand Protein, Calcium-Bind Protein, Phe-To-Trp Mutation, Acetylation, Muscle Protein, Polymorphism, Contractile Protein Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Wang, P. Mercier, P. -J. Letourneau, B. D. Sykes
Effects Of Phe-To-Trp Mutation And Fluorotryptophan Incorporation On The Solution Structure Of Cardiac Troponin C, And Analysis Of Its Suitability As A Potential Probe For In Situ Nmr Studies.
Protein Sci. V. 14 2447 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_063070 (A8V, chain A, )
2: VAR_019776 (L29Q, chain A, )
3: VAR_063071 (S84Y, chain A, )
4: VAR_063072 (E134D, chain A, )
5: VAR_063073 (D145E, chain A, )
6: VAR_043988 (G159R, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063070
A
8
V
TNNC1_HUMAN
Disease (CMH13)
---
A
A
8
V
2
UniProt
VAR_019776
L
29
Q
TNNC1_HUMAN
Disease (CMH13)
---
A
L
29
Q
3
UniProt
VAR_063071
C
84
Y
TNNC1_HUMAN
Disease (CMH13)
---
A
S
84
Y
4
UniProt
VAR_063072
E
134
D
TNNC1_HUMAN
Disease (CMH13)
---
A
E
134
D
5
UniProt
VAR_063073
D
145
E
TNNC1_HUMAN
Disease (CMH13)
---
A
D
145
E
6
UniProt
VAR_043988
G
159
R
TNNC1_HUMAN
Disease (CMD1Z)
---
A
G
159
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:33-51|A:52-87|A:92-127|A:128-161)
2: EF_HAND_1 (A:65-77|A:105-117|A:141-153)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC1_HUMAN
33-51
52-87
92-127
128-161
4
A:33-51
A:52-87
A:92-127
A:128-161
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC1_HUMAN
65-77
105-117
141-153
3
A:65-77
A:105-117
A:141-153
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (A:1-8)
Exon 1.2b (A:9-19)
Exon 1.3 (A:19-68)
Exon 1.4b (A:68-106)
Exon 1.5c (A:106-152)
Exon 1.6 (A:152-161)
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1: Boundary -/1.1
2: Boundary 1.1/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
6: Boundary 1.5c/1.6
7: Boundary 1.6/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000232975
1
ENSE00001063786
chr3:
52488086-52488008
79
TNNC1_HUMAN
1-8
8
1
A:1-8
8
1.2b
ENST00000232975
2b
ENSE00000770833
chr3:
52486529-52486499
31
TNNC1_HUMAN
9-19
11
1
A:9-19
11
1.3
ENST00000232975
3
ENSE00000770832
chr3:
52486268-52486122
147
TNNC1_HUMAN
19-68
50
1
A:19-68
50
1.4b
ENST00000232975
4b
ENSE00000770831
chr3:
52485874-52485760
115
TNNC1_HUMAN
68-106
39
1
A:68-106
39
1.5c
ENST00000232975
5c
ENSE00000770830
chr3:
52485543-52485407
137
TNNC1_HUMAN
106-152
47
1
A:106-152
47
1.6
ENST00000232975
6
ENSE00001063787
chr3:
52485322-52485118
205
TNNC1_HUMAN
152-161
10
1
A:152-161
10
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jt0a_ (A:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
automated matches
(54)
Human (Homo sapiens) [TaxId: 9606]
(21)
1a
d2jt0a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_EF_hand_5_2jt0A01 (A:93-157)
2a: PFAM_EF_hand_6_2jt0A02 (A:117-159)
2b: PFAM_EF_hand_6_2jt0A03 (A:117-159)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-2jt0A01
A:93-157
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-2jt0A02
A:117-159
2b
EF_hand_6-2jt0A03
A:117-159
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Chain A
Asymmetric Unit 1
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