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Getting 'Exon' information from database.
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Asym. Unit
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Asym.Unit (821 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF MMP20 COMPLEXED WITH NNGH
Authors
:
Y. Arendt, L. Banci, I. Bertini, F. Cantini, R. Cozzi, R. Del Conte, L. Gonnelli, Structural Proteomics In Europe (Spine)
Date
:
03 Jul 07 (Deposition) - 20 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Mmp-Nngh, Structural Genomics, Structural Proteomics In Europe, Spine, Spine-2, Spine2-Complexes, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Arendt, L. Banci, I. Bertini, F. Cantini, R. Cozzi, R. Del Conte, L. Gonnelli
Catalytic Domain Of Mmp20 (Enamelysin) - The Nmr Structure Of A New Matrix Metalloproteinase.
Febs Lett. V. 581 4723 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: N-ISOBUTYL-N-[4-METHOXYPHENYLSULFO... (NGHa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
NGH
1
Ligand/Ion
N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYLHYDROXAMIC ACID
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:183 , GLY A:184 , ARG A:186 , THR A:188 , ASP A:206 , GLU A:209
BINDING SITE FOR RESIDUE CA A 273
2
AC2
SOFTWARE
GLU A:164 , ALA A:165 , ASP A:166 , GLU A:197 , GLY A:198 , GLY A:200 , ASP A:202
BINDING SITE FOR RESIDUE CA A 274
3
AC3
SOFTWARE
HIS A:176 , ASP A:178 , HIS A:191 , HIS A:204
BINDING SITE FOR RESIDUE ZN A 275
4
AC4
SOFTWARE
HIS A:226 , HIS A:230 , HIS A:236 , NGH A:277
BINDING SITE FOR RESIDUE ZN A 276
5
AC5
SOFTWARE
GLY A:187 , THR A:188 , LEU A:189 , ALA A:190 , THR A:222 , HIS A:226 , GLU A:227 , HIS A:230 , HIS A:236 , TYR A:245 , PRO A:246 , THR A:247 , TYR A:248 , LYS A:249 , ZN A:276
BINDING SITE FOR RESIDUE NGH A 277
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_020512 (D139N, chain A, )
2: VAR_020513 (I169L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020512
D
139
N
MMP20_HUMAN
Polymorphism
17099014
A
D
139
N
2
UniProt
VAR_020513
I
169
L
MMP20_HUMAN
Polymorphism
17099008
A
I
169
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:223-232)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP20_HUMAN
223-232
1
A:223-232
[
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Exons
(5, 5)
Info
All Exons
Exon 1.2 (A:113-125)
Exon 1.3 (A:125-175)
Exon 1.4 (A:175-217)
Exon 1.5 (A:217-271)
Exon 1.6 (A:271-272)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260228
1
ENSE00000930310
chr11:
102496063-102495925
139
MMP20_HUMAN
1-42
42
0
-
-
1.2
ENST00000260228
2
ENSE00000930309
chr11:
102487790-102487543
248
MMP20_HUMAN
43-125
83
1
A:113-125
13
1.3
ENST00000260228
3
ENSE00000930308
chr11:
102482634-102482486
149
MMP20_HUMAN
125-175
51
1
A:125-175
51
1.4
ENST00000260228
4
ENSE00000930307
chr11:
102480761-102480636
126
MMP20_HUMAN
175-217
43
1
A:175-217
43
1.5
ENST00000260228
5
ENSE00000930306
chr11:
102479829-102479668
162
MMP20_HUMAN
217-271
55
1
A:217-271
55
1.6
ENST00000260228
6
ENSE00000930305
chr11:
102477407-102477266
142
MMP20_HUMAN
271-318
48
1
A:271-272
2
1.7
ENST00000260228
7
ENSE00000930304
chr11:
102465488-102465352
137
MMP20_HUMAN
318-364
47
0
-
-
1.8
ENST00000260228
8
ENSE00000930303
chr11:
102464326-102464170
157
MMP20_HUMAN
364-416
53
0
-
-
1.9
ENST00000260228
9
ENSE00000930302
chr11:
102449873-102449770
104
MMP20_HUMAN
416-451
36
0
-
-
1.10
ENST00000260228
10
ENSE00000930301
chr11:
102448157-102447566
592
MMP20_HUMAN
451-483
33
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jsda_ (A:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(32)
1a
d2jsda_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2jsdA00 (A:113-272)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
2jsdA00
A:113-272
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_2jsdA01 (A:116-271)
View:
Select:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-2jsdA01
A:116-271
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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