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2JRZ
Asym. Unit
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Asym.Unit (648 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE BRIGHT/ARID DOMAIN FROM THE HUMAN JARID1C PROTEIN.
Authors
:
C. Koehler, S. Bishop, E. F. Dowler, A. Diehl, P. Schmieder, M. Leidert, M. Sundstrom, C. H. Arrowsmith, J. Wiegelt, A. Edwards, H. Oschkinat, L. J. Ball, Structural Genomics Consortium (Sgc)
Date
:
29 Jun 07 (Deposition) - 10 Jul 07 (Release) - 18 Aug 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Jarid1C, Bright/Arid Domain, Helical, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Koehler, S. Bishop, E. F. Dowler, P. Schmieder, A. Diehl, H. Oschkinat, L. J. Ball
Backbone And Sidechain 1H, 13C And 15N Resonance Assignments Of The Bright/Arid Domain From The Human Jarid1C (Smcx) Protein.
Biomol. Nmr Assign. V. 2 9 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_032986 (D17G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032986
D
87
G
KDM5C_HUMAN
Disease (MRXSCJ)
---
A
D
17
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARID (A:9-99)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARID
PS51011
ARID domain profile.
KDM5C_HUMAN
79-169
1
A:9-99
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Exons
(4, 4)
Info
All Exons
Exon 1.3 (A:1-6)
Exon 1.4d (A:7-47)
Exon 1.5d (A:48-104)
Exon 1.6a (A:105-117)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4d
3: Boundary 1.4d/1.5d
4: Boundary 1.5d/1.6a
5: Boundary 1.6a/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000375401
1a
ENSE00001038655
X:53254604-53253922
683
KDM5C_HUMAN
1-50
50
0
-
-
1.3
ENST00000375401
3
ENSE00001666724
X:53250098-53250021
78
KDM5C_HUMAN
51-76
26
1
A:1-6
6
1.4d
ENST00000375401
4d
ENSE00001798397
X:53247580-53247458
123
KDM5C_HUMAN
77-117
41
1
A:7-47
41
1.5d
ENST00000375401
5d
ENSE00001691478
X:53247148-53246978
171
KDM5C_HUMAN
118-174
57
1
A:48-104
57
1.6a
ENST00000375401
6a
ENSE00001636291
X:53246459-53246325
135
KDM5C_HUMAN
175-219
45
1
A:105-117
13
1.7
ENST00000375401
7
ENSE00000860393
X:53245379-53245256
124
KDM5C_HUMAN
220-261
42
0
-
-
1.8a
ENST00000375401
8a
ENSE00000860394
X:53245158-53244977
182
KDM5C_HUMAN
261-321
61
0
-
-
1.9
ENST00000375401
9
ENSE00000860395
X:53244029-53243871
159
KDM5C_HUMAN
322-374
53
0
-
-
1.10
ENST00000375401
10
ENSE00001774049
X:53241088-53240969
120
KDM5C_HUMAN
375-414
40
0
-
-
1.11b
ENST00000375401
11b
ENSE00000860397
X:53240837-53240679
159
KDM5C_HUMAN
415-467
53
0
-
-
1.12
ENST00000375401
12
ENSE00001600748
X:53240039-53239858
182
KDM5C_HUMAN
468-528
61
0
-
-
1.13a
ENST00000375401
13a
ENSE00001800989
X:53239758-53239596
163
KDM5C_HUMAN
528-582
55
0
-
-
1.14b
ENST00000375401
14b
ENSE00001724828
X:53231155-53231036
120
KDM5C_HUMAN
583-622
40
0
-
-
1.15a
ENST00000375401
15a
ENSE00000860401
X:53230926-53230732
195
KDM5C_HUMAN
623-687
65
0
-
-
1.16
ENST00000375401
16
ENSE00001763425
X:53228340-53228159
182
KDM5C_HUMAN
688-748
61
0
-
-
1.17a
ENST00000375401
17a
ENSE00001614347
X:53228070-53227946
125
KDM5C_HUMAN
748-790
43
0
-
-
1.17c
ENST00000375401
17c
ENSE00000860404
X:53227819-53227672
148
KDM5C_HUMAN
790-839
50
0
-
-
1.18a
ENST00000375401
18a
ENSE00000860405
X:53227058-53226953
106
KDM5C_HUMAN
839-874
36
0
-
-
1.19
ENST00000375401
19
ENSE00000860406
X:53226226-53225868
359
KDM5C_HUMAN
875-994
120
0
-
-
1.20
ENST00000375401
20
ENSE00001690780
X:53225236-53225098
139
KDM5C_HUMAN
994-1040
47
0
-
-
1.21
ENST00000375401
21
ENSE00001667228
X:53224592-53224413
180
KDM5C_HUMAN
1041-1100
60
0
-
-
1.22
ENST00000375401
22
ENSE00001605274
X:53224250-53224113
138
KDM5C_HUMAN
1101-1146
46
0
-
-
1.23
ENST00000375401
23
ENSE00000860410
X:53223920-53223321
600
KDM5C_HUMAN
1147-1346
200
0
-
-
1.24b
ENST00000375401
24b
ENSE00000860411
X:53223033-53222955
79
KDM5C_HUMAN
1347-1373
27
0
-
-
1.25
ENST00000375401
25
ENSE00001764157
X:53222818-53222619
200
KDM5C_HUMAN
1373-1439
67
0
-
-
1.26c
ENST00000375401
26c
ENSE00001466943
X:53222514-53221334
1181
KDM5C_HUMAN
1440-1560
121
0
-
-
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SCOP Domains
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2jrzA00 (A:1-117)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.60, no name defined]
(11)
Human (Homo sapiens)
(7)
1a
2jrzA00
A:1-117
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Chain A
Asymmetric Unit 1
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