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2JQR
Asym. Unit
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Asym.Unit (566 KB)
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Models
(10 )
Title
:
SOLUTION MODEL OF CROSSLINKED COMPLEX OF CYTOCHROME C AND ADRENODOXIN
Authors
:
X. Xu, W. Reinle, F. Hannemann, P. V. Konarev, D. I. Svergun, R. Bernhardt, M. Ubbink
Date
:
07 Jun 07 (Deposition) - 22 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Electron Transport, Cytochrome C, Adrenodoxin, Crosslinked Complex, 2Fe2S Ferredoxin, Pseudocontact Shift, Paramagnetic Relaxation Enhancement, Encounter Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Xu, W. Reinle, F. Hannemann, P. V. Konarev, D. I. Svergun, R. Bernhardt, M. Ubbink
Dynamics In A Pure Encounter Complex Of Two Proteins Studied By Solution Scattering And Paramagnetic Nmr Spectroscopy
J. Am. Chem. Soc. V. 130 6395 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2a: HEME C (HECa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
HEC
1
Ligand/Ion
HEME C
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:16 , LEU B:30 , GLY B:44 , ALA B:45 , CYS B:46 , GLY B:48 , THR B:49 , CYS B:55
BINDING SITE FOR RESIDUE FES B 109
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:1-101)
2: 2FE2S_FER_2 (B:7-108)
3: ADX (B:46-56)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC1_YEAST
7-108
1
A:1-101
2
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
ADX_BOVIN
65-169
1
B:7-108
3
ADX
PS00814
Adrenodoxin family, iron-sulfur binding region signature.
ADX_BOVIN
104-114
1
B:46-56
[
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Exons
(5, 5)
Info
All Exons
Exon 1.2 (B:6-6)
Exon 1.3 (B:6-48)
Exon 1.4 (B:48-91)
Exon 1.5 (B:91-108)
Exon 2.1 (A:-4-103)
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All Exon Boundaries
1: Boundary -/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
6: Boundary -/2.1
7: Boundary 2.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENSBTAT00000015660
2
ENSBTAE00000127216
chr15:
18520776-18521119
344
ADX_BOVIN
1-64
64
1
B:6-6
1
1.3
ENSBTAT00000015660
3
ENSBTAE00000127236
chr15:
18526683-18526807
125
ADX_BOVIN
64-106
43
1
B:6-48
43
1.4
ENSBTAT00000015660
4
ENSBTAE00000127241
chr15:
18545168-18545297
130
ADX_BOVIN
106-149
44
1
B:48-91
44
1.5
ENSBTAT00000015660
5
ENSBTAE00000359886
chr15:
18555251-18556187
937
ADX_BOVIN
149-190
42
1
B:91-108
18
2.1
YJR048W
1
YJR048W.1
X:526327-526656
330
CYC1_YEAST
1-109
109
1
A:-4-103
108
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SCOP Domains
(0, 0)
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2jqrB00 (B:6-108)
2a: CATH_2jqrA00 (A:-4-103)
View:
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Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Baker's yeast (Saccharomyces cerevisiae)
(4)
1a
2jqrB00
B:6-108
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Baker's yeast (Saccharomyces cerevisiae)
(49)
2a
2jqrA00
A:-4-103
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Cytochrom_C_2jqrA01 (A:3-101)
2a: PFAM_Fer2_2jqrB01 (B:12-97)
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Clans
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(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C
(54)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
Cytochrom_C-2jqrA01
A:3-101
Clan
:
Fer2
(69)
Family
:
Fer2
(60)
Bos taurus (Bovine)
(10)
2a
Fer2-2jqrB01
B:12-97
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Asymmetric Unit 1
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