PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2JPW
Asym. Unit
Info
Asym.Unit (177 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE BISPHOSPHORYLATED CARDIAC SPECIFIC N-EXTENSION OF CARDIAC TROPONIN I
Authors
:
J. W. Howarth, P. R. Rosevear, J. Meller, R. J. Solaro, J. Trewhella
Date
:
24 May 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Poly (L-Proline) Ii Helix, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Howarth, J. Meller, R. J. Solaro, J. Trewhella, P. R. Rosevear
Phosphorylation-Dependent Conformational Transition Of The Cardiac Specific N-Extension Of Troponin I In Cardiac Troponin
J. Mol. Biol. V. 373 706 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:1-4)
Exon 1.4a (A:4-8)
Exon 1.4d (A:9-32)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/1.4d
4: Boundary 1.4d/1.4f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENSMUST00000098859
3a
ENSMUSE00000843086
chr7:
4474130-4473907
224
TNNI3_MOUSE
1-4
4
1
A:1-4
4
1.4a
ENSMUST00000098859
4a
ENSMUSE00000637545
chr7:
4473684-4473672
13
TNNI3_MOUSE
4-8
5
1
A:4-8
5
1.4d
ENSMUST00000098859
4d
ENSMUSE00000538560
chr7:
4473504-4473418
87
TNNI3_MOUSE
9-37
29
1
A:9-32
24
1.4f
ENSMUST00000098859
4f
ENSMUSE00000538558
chr7:
4472988-4472947
42
TNNI3_MOUSE
38-51
14
0
-
-
1.5b
ENSMUST00000098859
5b
ENSMUSE00000637538
chr7:
4472696-4472565
132
TNNI3_MOUSE
52-95
44
0
-
-
1.6c
ENSMUST00000098859
6c
ENSMUSE00000899165
chr7:
4472129-4472040
90
TNNI3_MOUSE
96-125
30
0
-
-
1.7b
ENSMUST00000098859
7b
ENSMUSE00000637536
chr7:
4471176-4471000
177
TNNI3_MOUSE
126-184
59
0
-
-
1.8b
ENSMUST00000098859
8b
ENSMUSE00000808936
chr7:
4470053-4469907
147
TNNI3_MOUSE
185-211
27
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Troponin_I_N_2jpwA01 (A:1-32)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Troponin-I_N]
(1)
Family
:
Troponin-I_N
(1)
Mus musculus (Mouse)
(1)
1a
Troponin-I_N-2jpwA01
A:1-32
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (177 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2JPW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
