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2JM4
Asym. Unit
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Asym.Unit (240 KB)
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Models
(24 )
Title
:
THE SOLUTION NMR STRUCTURE OF THE RELAXIN (RXFP1) RECEPTOR LDLA MODULE.
Authors
:
E. J. Hopkins, R. A. D. Bathgate, P. R. Gooley
Date
:
09 Oct 06 (Deposition) - 12 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (24 x)
Keywords
:
Ldl-A Module, Rxfp1 Receptor, Lgr7, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Hopkins, S. Layfield, T. Ferraro, R. A. D. Bathgate, P. R. Gooley
The Nmr Solution Structure Of The Relaxin (Rxfp1) Receptor Lipoprotein Receptor Class A Module And Identification Of Key Residues In The N-Terminal Region Of The Module That Mediate Receptor Activation
J. Biol. Chem. V. 282 4172 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:25 , ASN A:28 , VAL A:30 , ASP A:32 , ASP A:38 , GLU A:39
BINDING SITE FOR RESIDUE CA A 44
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LDLRA_2 (A:6-43)
2: LDLRA_1 (A:20-42)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_2
PS50068
LDL-receptor class A (LDLRA) domain profile.
RXFP1_HUMAN
26-63
1
A:6-43
2
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
RXFP1_HUMAN
40-62
1
A:20-42
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Exons
(2, 2)
Info
All Exons
Exon 1.7a (A:1-43)
Exon 1.8 (A:43-43)
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All Exon Boundaries
1: Boundary 1.4a/1.7a
2: Boundary 1.7a/1.8
3: Boundary 1.8/1.9b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000307765
4a
ENSE00002201510
chr4:
159442878-159443177
300
RXFP1_HUMAN
1-17
17
0
-
-
1.7a
ENST00000307765
7a
ENSE00001725025
chr4:
159493850-159493987
138
RXFP1_HUMAN
17-63
47
1
A:1-43
43
1.8
ENST00000307765
8
ENSE00001786506
chr4:
159514553-159514651
99
RXFP1_HUMAN
63-96
34
1
A:43-43
1
1.9b
ENST00000307765
9b
ENSE00001126785
chr4:
159520478-159520583
106
RXFP1_HUMAN
96-131
36
0
-
-
1.10
ENST00000307765
10
ENSE00001126775
chr4:
159526220-159526291
72
RXFP1_HUMAN
131-155
25
0
-
-
1.12
ENST00000307765
12
ENSE00001126766
chr4:
159529124-159529195
72
RXFP1_HUMAN
155-179
25
0
-
-
1.14
ENST00000307765
14
ENSE00001126758
chr4:
159533282-159533353
72
RXFP1_HUMAN
179-203
25
0
-
-
1.15
ENST00000307765
15
ENSE00001126752
chr4:
159533443-159533514
72
RXFP1_HUMAN
203-227
25
0
-
-
1.16
ENST00000307765
16
ENSE00001126746
chr4:
159538283-159538357
75
RXFP1_HUMAN
227-252
26
0
-
-
1.17
ENST00000307765
17
ENSE00001126740
chr4:
159547972-159548043
72
RXFP1_HUMAN
252-276
25
0
-
-
1.18
ENST00000307765
18
ENSE00001126735
chr4:
159549790-159549861
72
RXFP1_HUMAN
276-300
25
0
-
-
1.19
ENST00000307765
19
ENSE00001126730
chr4:
159554557-159554628
72
RXFP1_HUMAN
300-324
25
0
-
-
1.20
ENST00000307765
20
ENSE00001126726
chr4:
159559160-159559231
72
RXFP1_HUMAN
324-348
25
0
-
-
1.21
ENST00000307765
21
ENSE00001126719
chr4:
159560412-159560483
72
RXFP1_HUMAN
348-372
25
0
-
-
1.22
ENST00000307765
22
ENSE00001126712
chr4:
159566061-159566290
230
RXFP1_HUMAN
372-449
78
0
-
-
1.24
ENST00000307765
24
ENSE00001126705
chr4:
159567943-159568353
411
RXFP1_HUMAN
449-586
138
0
-
-
1.25
ENST00000307765
25
ENSE00001126696
chr4:
159569651-159569869
219
RXFP1_HUMAN
586-659
74
0
-
-
1.26d
ENST00000307765
26d
ENSE00001905889
chr4:
159572909-159574524
1616
RXFP1_HUMAN
659-757
99
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2jm4A00 (A:1-43)
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Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Low-density Lipoprotein Receptor
(15)
Homologous Superfamily
:
Low-density Lipoprotein Receptor
(15)
Human (Homo sapiens)
(12)
1a
2jm4A00
A:1-43
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ldl_recept_a_2jm4A01 (A:5-42)
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Clan
:
no clan defined [family: Ldl_recept_a]
(10)
Family
:
Ldl_recept_a
(10)
Homo sapiens (Human)
(9)
1a
Ldl_recept_a-2jm4A01
A:5-42
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Chain A
Asymmetric Unit 1
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