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2JLX
Asym. Unit
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Asym.Unit (168 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP-VANADATE
Authors
:
D. H. Luo, T. Xu, R. P. Watson, D. S. Becker, A. Sampath, W. Jahnke, S. S. Ye C. H. Wang, S. P. Lim, S. G. Vasudevan, J. Lescar
Date
:
15 Sep 08 (Deposition) - 25 Nov 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase-Rna Complex, Hydrolase Rna Complex, Envelope Protein, Ribonucleoprotein, Capsid Protein, Rna Replication, Serine Protease, Glycoprotein, Dengue Virus, Metal-Binding, Transferase, Atp-Binding, Rna-Binding, Flaviviruses, Transcription Regulation, Rna-Directed Rna Polymerase, Nucleotide-Binding, Viral Nucleoprotein, Secreted, Helicase, Vanadate, Protease, Hydrolase, Cleavage On Pair Of Basic Residues, Endoplasmic Reticulum, Nucleotidyltransferase, Adp, Ssrna, Virion, Atpase, Nucleus, Membrane, Transmembrane, Transcription, Phosphoprotein, Ns3 Helicase Structure, Multifunctional Enzyme
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. H. Luo, T. Xu, R. P. Watson, D. Scherer-Becker, A. Sampath, W. Jahnke S. S. Yeong, C. H. Wang, S. P. Lim, A. Strongin, S. G. Vasudevan, J. Lesca
Insights Into Rna Unwinding And Atp Hydrolysis By The Flavivirus Ns3 Protein.
Embo J. V. 27 3209 2008
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: CHLORIDE ION (CLa)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: VANADATE ION (VO4a)
4b: VANADATE ION (VO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MN
2
Ligand/Ion
MANGANESE (II) ION
4
VO4
2
Ligand/Ion
VANADATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:196 , ALA A:197 , GLY A:198 , LYS A:199 , THR A:200 , LYS A:201 , GLU A:233 , ASN A:329 , ASN A:416 , ARG A:418 , ARG A:463 , VO4 A:1620 , MN A:1621 , HOH A:2198
BINDING SITE FOR RESIDUE ADP A1619
2
AC2
SOFTWARE
GLY B:196 , ALA B:197 , GLY B:198 , LYS B:199 , THR B:200 , LYS B:201 , ASN B:329 , ASN B:416 , ARG B:418 , ARG B:463 , VO4 B:1620 , MN B:1621 , CL B:1622 , HOH B:2170
BINDING SITE FOR RESIDUE ADP B1619
3
AC3
SOFTWARE
PRO A:195 , GLY A:196 , LYS A:199 , GLU A:285 , ALA A:316 , GLY A:414 , GLN A:456 , ARG A:460 , ARG A:463 , ADP A:1619 , MN A:1621 , HOH A:2042 , HOH A:2197 , HOH A:2198
BINDING SITE FOR RESIDUE VO4 A1620
4
AC4
SOFTWARE
PRO B:195 , GLY B:196 , LYS B:199 , GLU B:285 , ALA B:316 , GLY B:414 , GLN B:456 , ARG B:460 , ARG B:463 , ADP B:1619 , MN B:1621 , HOH B:2028 , HOH B:2170 , HOH B:2171 , HOH B:2172
BINDING SITE FOR RESIDUE VO4 B1620
5
AC5
SOFTWARE
THR A:200 , GLU A:285 , ADP A:1619 , VO4 A:1620 , HOH A:2196 , HOH A:2197 , HOH A:2198
BINDING SITE FOR RESIDUE MN A1621
6
AC6
SOFTWARE
THR B:200 , GLU B:285 , ADP B:1619 , VO4 B:1620 , HOH B:2170 , HOH B:2171 , HOH B:2172
BINDING SITE FOR RESIDUE MN B1621
7
AC7
SOFTWARE
ASN B:416 , ARG B:418 , ARG B:463 , ADP B:1619 , HOH B:2106
BINDING SITE FOR RESIDUE CL B1622
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2jlxa2 (A:483-618)
2a: SCOP_d2jlxa1 (A:168-482)
2b: SCOP_d2jlxb1 (B:168-482)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Dengue virus 4 [TaxId: 408688]
(4)
1a
d2jlxa2
A:483-618
Family
:
RNA helicase
(31)
Protein domain
:
automated matches
(11)
Dengue virus 4 [TaxId: 408688]
(9)
2a
d2jlxa1
A:168-482
2b
d2jlxb1
B:168-482
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Flavi_DEAD_2jlxB01 (B:183-330)
1b: PFAM_Flavi_DEAD_2jlxB02 (B:183-330)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Flavi_DEAD
(27)
Dengue virus type 4 (strain Thailand/0348/1991) (DENV-4)
(10)
1a
Flavi_DEAD-2jlxB01
B:183-330
1b
Flavi_DEAD-2jlxB02
B:183-330
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Asymmetric Unit 1
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Asym.Unit (168 KB)
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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