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2JLA
Biol. Unit 2
Info
Asym.Unit (363 KB)
Biol.Unit 1 (180 KB)
Biol.Unit 2 (181 KB)
Biol.Unit 3 (353 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E.COLI MEND, 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE - SEMET PROTEIN
Authors
:
A. Dawson, P. K. Fyfe, W. N. Hunter
Date
:
05 Sep 08 (Deposition) - 21 Oct 08 (Release) - 14 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Manganese, Transferase, Thiamine Diphosphate Cofactor, Thiamine Pyrophosphate, Menaquinone Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dawson, P. K. Fyfe, W. N. Hunter
Specificity And Reactivity In Menaquinone Biosynthesis: The Structure Of Escherichia Coli Mend (2-Succinyl-5-Enolpyruvyl-6-Hydroxy-3- Cyclohexadiene-1-Carboxylate Synthase).
J. Mol. Biol. V. 384 1353 2008
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: THIAMINE DIPHOSPHATE (TPPa)
4b: THIAMINE DIPHOSPHATE (TPPb)
4c: THIAMINE DIPHOSPHATE (TPPc)
4d: THIAMINE DIPHOSPHATE (TPPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
TPP
2
Ligand/Ion
THIAMINE DIPHOSPHATE
[
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Sites
(13, 13)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
SER C:391 , LEU C:392 , SER C:416 , GLY C:417 , ILE C:418 , ASP C:419 , GLY C:441 , ASP C:442 , LEU C:443 , SER C:444 , ASN C:469 , GLY C:471 , GLY C:472 , GLN C:473 , ILE C:474 , MN C:1558 , HOH C:2084 , HOH C:2085 , HOH C:2086 , PRO D:30 , GLU D:55 , THR D:81 , ALA D:82
BINDING SITE FOR RESIDUE TPP C 1557
02
AC6
SOFTWARE
ASP C:442 , ASN C:469 , GLY C:471 , TPP C:1557 , HOH C:2086
BINDING SITE FOR RESIDUE MN C 1558
03
AC7
SOFTWARE
PRO C:30 , GLU C:55 , THR C:81 , ALA C:82 , SER D:391 , LEU D:392 , SER D:416 , GLY D:417 , ILE D:418 , ASP D:419 , GLY D:441 , ASP D:442 , LEU D:443 , SER D:444 , TYR D:447 , ASN D:469 , GLY D:471 , GLY D:472 , GLN D:473 , ILE D:474 , MN D:1558 , HOH D:2111
BINDING SITE FOR RESIDUE TPP D 1557
04
AC8
SOFTWARE
ASP D:442 , ASN D:469 , GLY D:471 , TPP D:1557 , HOH D:2111
BINDING SITE FOR RESIDUE MN D 1558
05
BC2
SOFTWARE
GLY C:31 , SER C:32 , THR C:78 , GLN C:118
BINDING SITE FOR RESIDUE CL C 1559
06
BC3
SOFTWARE
SER D:32 , THR D:78
BINDING SITE FOR RESIDUE CL D 1559
07
BC4
SOFTWARE
PRO A:137 , ARG A:138 , ARG C:138
BINDING SITE FOR RESIDUE CL C 1560
08
BC5
SOFTWARE
ARG B:138 , ARG D:138 , HOH D:2028
BINDING SITE FOR RESIDUE CL B 1560
09
BC8
SOFTWARE
SER C:391 , ARG C:395 , ARG C:413
BINDING SITE FOR RESIDUE CL C 1561
10
BC9
SOFTWARE
SER D:391 , ARG D:395 , ARG D:413
BINDING SITE FOR RESIDUE CL D 1560
11
CC1
SOFTWARE
HIS C:509 , ASP C:523 , HOH C:2087
BINDING SITE FOR RESIDUE MN C 1562
12
CC2
SOFTWARE
GLU A:505 , HIS D:496
BINDING SITE FOR RESIDUE CL A 1561
13
CC4
SOFTWARE
THR B:243 , THR D:243
BINDING SITE FOR RESIDUE CL D 1561
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TPP_enzyme_C_2jlaD01 (D:396-535)
1b: PFAM_TPP_enzyme_C_2jlaD02 (D:396-535)
1c: PFAM_TPP_enzyme_C_2jlaD03 (D:396-535)
1d: PFAM_TPP_enzyme_C_2jlaD04 (D:396-535)
2a: PFAM_TPP_enzyme_N_2jlaD05 (D:8-172)
2b: PFAM_TPP_enzyme_N_2jlaD06 (D:8-172)
2c: PFAM_TPP_enzyme_N_2jlaD07 (D:8-172)
2d: PFAM_TPP_enzyme_N_2jlaD08 (D:8-172)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
THDP-binding
(106)
Family
:
TPP_enzyme_C
(54)
Escherichia coli (strain K12)
(6)
1a
TPP_enzyme_C-2jlaD01
D:396-535
1b
TPP_enzyme_C-2jlaD02
D:396-535
1c
TPP_enzyme_C-2jlaD03
D:396-535
1d
TPP_enzyme_C-2jlaD04
D:396-535
Family
:
TPP_enzyme_N
(54)
Escherichia coli (strain K12)
(6)
2a
TPP_enzyme_N-2jlaD05
D:8-172
2b
TPP_enzyme_N-2jlaD06
D:8-172
2c
TPP_enzyme_N-2jlaD07
D:8-172
2d
TPP_enzyme_N-2jlaD08
D:8-172
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (363 KB)
Header - Asym.Unit
Biol.Unit 1 (180 KB)
Header - Biol.Unit 1
Biol.Unit 2 (181 KB)
Header - Biol.Unit 2
Biol.Unit 3 (353 KB)
Header - Biol.Unit 3
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