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2JL4
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
HOLO STRUCTURE OF MALEYL PYRUVATE ISOMERASE, A BACTERIAL GLUTATHIONE-S-TRANSFERASE IN ZETA CLASS
Authors
:
D. K. Shoemark, N. Y Zhou, P. A. Williams, A. T. Hadfield
Date
:
04 Sep 08 (Deposition) - 16 Sep 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glutathione-S-Transferase, Gst, Plasmid, Pyruvate, Bacterial, Isomerase, Biodegradation, Maleyl Pyruvate, Fumaryl Pyruvate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Marsh, D. K. Shoemark, A. Jacob, C. Robinson, B. Cahill, N. Y. Zhou, P. A. Williams, A. T. Hadfield
Structure Of Bacterial Glutathione-S-Transferase Maleyl Pyruvate Isomerase And Implications For Mechanism Of Isomerisation.
J. Mol. Biol. V. 384 165 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
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No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:9 , GLY A:10 , THR A:11 , ARG A:14 , HIS A:38 , LEU A:51 , VAL A:52 , GLN A:64 , SER A:65 , PRO A:66 , HIS A:104 , ASN A:108 , ARG A:109 , ARG A:110 , HOH A:2230 , HOH A:2231 , HOH A:2232 , HOH A:2233 , HOH A:2234 , CYS B:101 , ASP B:102
BINDING SITE FOR RESIDUE GSH A1213
2
AC2
SOFTWARE
ASP A:102 , HOH A:2118 , SER B:9 , GLY B:10 , THR B:11 , ARG B:14 , HIS B:38 , LEU B:51 , VAL B:52 , PRO B:53 , GLN B:64 , SER B:65 , PRO B:66 , HIS B:104 , ASN B:108 , ARG B:109 , ARG B:110 , HOH B:2095 , HOH B:2199 , HOH B:2200 , HOH B:2201
BINDING SITE FOR RESIDUE GSH B1213
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:1-80,B:1-80)
2: GST_CTER (A:85-212,B:85-212)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
NAGL_RALSP
1-80
2
A:1-80
B:1-80
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
NAGL_RALSP
85-212
2
A:85-212
B:85-212
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2jl4a2 (A:80-212)
1b: SCOP_d2jl4b2 (B:80-212)
2a: SCOP_d2jl4a1 (A:1-79)
2b: SCOP_d2jl4b1 (B:1-79)
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Ralstonia sp. [TaxId: 70356]
(2)
1a
d2jl4a2
A:80-212
1b
d2jl4b2
B:80-212
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Ralstonia sp. [TaxId: 70356]
(2)
2a
d2jl4a1
A:1-79
2b
d2jl4b1
B:1-79
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2jl4A02 (A:83-212)
1b: CATH_2jl4B02 (B:83-212)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
U2 (Ralstonia sp)
(1)
1a
2jl4A02
A:83-212
1b
2jl4B02
B:83-212
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (83 KB)
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