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2JKU
Asym. Unit
Info
Asym.Unit (20 KB)
Biol.Unit 1 (15 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL REGION OF THE BIOTIN ACCEPTOR DOMAIN OF HUMAN PROPIONYL-COA CARBOXYLASE
Authors
:
S. Healy, W. W. Yue, G. Kochan, E. S. Pilka, J. W. Murray, A. K. Roos, P. Filippakopoulos, F. Von Delft, C. Arrowsmith, M. Wikstrom, A. Edwards, C. Bountra, R. A. Gravel, U. Oppermann
Date
:
30 Aug 08 (Deposition) - 09 Sep 08 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ligase, Biotin, Atp-Binding, Disease Mutation, Nucleotide-Binding, Mitochondrion, Phosphoprotein, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Healy, M. K. Mcdonald, X. Wu, W. W. Yue, G. Kochan, U. Oppermann, R. A. Gravel
Structural Impact Of Human And Escherichia Coli Biotin Carboxyl Carrier Proteins On Biotin Attachment.
Biochemistry V. 49 4687 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: TETRAETHYLENE GLYCOL (PG4a)
1b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:634 , VAL A:636 , ALA A:647 , GLU A:661 , VAL A:664
BINDING SITE FOR RESIDUE PG4 A1668
2
AC2
SOFTWARE
ARG A:638 , GLU A:658 , GLY A:659 , HOH A:2058
BINDING SITE FOR RESIDUE PG4 A1669
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_009101 (G643R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_009101
G
668
R
PCCA_HUMAN
Disease (PA-1)
---
A
G
643
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BIOTIN (A:659-667)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIOTIN
PS00188
Biotin-requiring enzymes attachment site.
PCCA_HUMAN
684-701
1
A:659-667
[
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Exons
(2, 2)
Info
All Exons
Exon 1.28 (A:633-655)
Exon 1.30 (A:656-667)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26/1.28
2: Boundary 1.28/1.30
3: Boundary 1.30/1.31
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000376285
1a
ENSE00001685308
chr13:
100741337-100741479
143
PCCA_HUMAN
1-35
35
0
-
-
1.2
ENST00000376285
2
ENSE00001697964
chr13:
100755137-100755214
78
PCCA_HUMAN
36-61
26
0
-
-
1.3
ENST00000376285
3
ENSE00001723053
chr13:
100764095-100764142
48
PCCA_HUMAN
62-77
16
0
-
-
1.4
ENST00000376285
4
ENSE00001739393
chr13:
100764247-100764315
69
PCCA_HUMAN
78-100
23
0
-
-
1.7
ENST00000376285
7
ENSE00001690014
chr13:
100807233-100807346
114
PCCA_HUMAN
101-138
38
0
-
-
1.8
ENST00000376285
8
ENSE00001722625
chr13:
100809541-100809594
54
PCCA_HUMAN
139-156
18
0
-
-
1.10
ENST00000376285
10
ENSE00001805607
chr13:
100861586-100861717
132
PCCA_HUMAN
157-200
44
0
-
-
1.11
ENST00000376285
11
ENSE00001638065
chr13:
100888096-100888132
37
PCCA_HUMAN
201-213
13
0
-
-
1.12
ENST00000376285
12
ENSE00001673087
chr13:
100909849-100909927
79
PCCA_HUMAN
213-239
27
0
-
-
1.13
ENST00000376285
13
ENSE00001698412
chr13:
100914983-100915085
103
PCCA_HUMAN
239-273
35
0
-
-
1.14
ENST00000376285
14
ENSE00001713098
chr13:
100920943-100921037
95
PCCA_HUMAN
274-305
32
0
-
-
1.15
ENST00000376285
15
ENSE00001593748
chr13:
100925450-100925600
151
PCCA_HUMAN
305-355
51
0
-
-
1.17
ENST00000376285
17
ENSE00001652442
chr13:
100953714-100953857
144
PCCA_HUMAN
356-403
48
0
-
-
1.18
ENST00000376285
18
ENSE00001804646
chr13:
100955178-100955252
75
PCCA_HUMAN
404-428
25
0
-
-
1.20
ENST00000376285
20
ENSE00001629467
chr13:
100959446-100959514
69
PCCA_HUMAN
429-451
23
0
-
-
1.21
ENST00000376285
21
ENSE00001665361
chr13:
100962087-100962162
76
PCCA_HUMAN
452-477
26
0
-
-
1.22
ENST00000376285
22
ENSE00001696369
chr13:
100982815-100982925
111
PCCA_HUMAN
477-514
38
0
-
-
1.23
ENST00000376285
23
ENSE00002154556
chr13:
100992411-100992513
103
PCCA_HUMAN
514-548
35
0
-
-
1.24a
ENST00000376285
24a
ENSE00002179391
chr13:
101020726-101020828
103
PCCA_HUMAN
548-582
35
0
-
-
1.25
ENST00000376285
25
ENSE00002195459
chr13:
101077887-101077985
99
PCCA_HUMAN
583-615
33
0
-
-
1.26
ENST00000376285
26
ENSE00001758999
chr13:
101101506-101101559
54
PCCA_HUMAN
616-633
18
0
-
-
1.28
ENST00000376285
28
ENSE00001622034
chr13:
101167681-101167821
141
PCCA_HUMAN
634-680
47
1
A:633-655
23
1.30
ENST00000376285
30
ENSE00001648714
chr13:
101179929-101180006
78
PCCA_HUMAN
681-706
26
1
A:656-667
12
1.31
ENST00000376285
31
ENSE00001696675
chr13:
101182352-101182686
335
PCCA_HUMAN
707-728
22
0
-
-
[
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SCOP Domains
(0, 0)
Info
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View:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Biotin_lipoyl_2jkuA01 (A:635-667)
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Clan
:
Hybrid
(58)
Family
:
Biotin_lipoyl
(16)
Homo sapiens (Human)
(8)
1a
Biotin_lipoyl-2jkuA01
A:635-667
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Chain A
Asymmetric Unit 1
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