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2JKT
Biol. Unit 1
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (602 KB)
Biol.Unit 2 (604 KB)
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(1)
Title
:
AP2 CLATHRIN ADAPTOR CORE WITH CD4 DILEUCINE PEPTIDE RM( PHOSPHOS)EIKRLLSE Q TO E MUTANT
Authors
:
D. J. Owen, A. J. Mccoy, B. T. Kelly, P. R. Evans
Date
:
29 Aug 08 (Deposition) - 28 Oct 08 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,E,I,L,M,P,Q,S,U
Biol. Unit 1: A,B,M,P,S (1x)
Biol. Unit 2: E,I,L,Q,U (1x)
Keywords
:
Alternative Splicing, Phosphoprotein, Phosphorylation, Protein Transport, Adaptor, Membrane, Transport, Coated Pit, Endocytosis, Cell Membrane, Lipid-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. T. Kelly, A. J. Mccoy, K. Spaete, S. E. Miller, P. R. Evans, S. Hoening, D. J. Owen
A Structural Explanation For The Binding Of Endocytic Dileucine Motifs By The Ap2 Complex.
Nature V. 456 976 2008
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
2
SO4
15
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN M:42 , ARG M:44 , ASN M:217 , ASP M:218 , ARG M:402
BINDING SITE FOR RESIDUE SO4 M1436
02
AC3
SOFTWARE
HIS A:527 , HIS A:531 , SER A:565 , GLN A:568
BINDING SITE FOR RESIDUE SO4 A1624
03
AC6
SOFTWARE
ARG B:304 , HIS B:575
BINDING SITE FOR RESIDUE SO4 B1583
04
AC9
SOFTWARE
LYS B:312 , ARG B:313
BINDING SITE FOR RESIDUE SO4 B1584
05
BC1
SOFTWARE
LYS B:372 , ARG B:375
BINDING SITE FOR RESIDUE SO4 B1585
06
BC3
SOFTWARE
ARG A:11 , GLY A:12 , TYR A:53 , LYS A:57 , ALA B:352
BINDING SITE FOR RESIDUE SO4 A1625
07
BC4
SOFTWARE
GLY A:12 , GLU A:36 , ASN A:39 , LYS A:57 , TYR A:58 , LYS A:61
BINDING SITE FOR RESIDUE SO4 A1626
08
BC6
SOFTWARE
ARG B:371 , ARG B:375 , LYS M:312 , SER M:314
BINDING SITE FOR RESIDUE SO4 B1586
09
BC8
SOFTWARE
LYS A:618 , LYS A:619 , LYS A:620
BINDING SITE FOR RESIDUE SO4 A1627
10
BC9
SOFTWARE
ARG M:40 , GLN M:41 , GLN M:42
BINDING SITE FOR RESIDUE SO4 M1437
11
CC7
SOFTWARE
LYS A:617 , SO4 A:1629
BINDING SITE FOR RESIDUE SO4 A1628
12
CC8
SOFTWARE
LYS A:617 , LYS A:618 , GLY A:622 , SO4 A:1628
BINDING SITE FOR RESIDUE SO4 A1629
13
CC9
SOFTWARE
SER B:531 , THR U:375
BINDING SITE FOR RESIDUE SO4 B1587
14
DC1
SOFTWARE
GLN E:504 , SER E:531 , THR M:375
BINDING SITE FOR RESIDUE SO4 M1438
15
DC4
SOFTWARE
ARG A:177 , THR A:213 , GLN A:216
BINDING SITE FOR RESIDUE SO4 A1630
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: CLAT_ADAPTOR_S (S:57-67)
2: CLAT_ADAPTOR_M_1 (M:159-179)
3: MHD (M:170-434)
4: CLAT_ADAPTOR_M_2 (M:263-277)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLAT_ADAPTOR_S
PS00989
Clathrin adaptor complexes small chain signature.
AP2S1_MOUSE
57-67
1
-
S:57-67
2
CLAT_ADAPTOR_M_1
PS00990
Clathrin adaptor complexes medium chain signature 1.
AP2M1_RAT
159-179
1
M:159-179
-
3
MHD
PS51072
Mu homology domain (MHD) profile.
AP2M1_RAT
170-434
1
M:170-434
-
4
CLAT_ADAPTOR_M_2
PS00991
Clathrin adaptor complexes medium chain signature 2.
AP2M1_RAT
263-277
1
M:263-277
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(3, 10)
Info
all CATH domains
1a: CATH_2jktI00 (I:1-142)
1b: CATH_2jktM01 (M:1-141)
1c: CATH_2jktU01 (U:1-141)
1d: CATH_2jktS00 (S:1-142)
2a: CATH_2jktB00 (B:12-582)
2b: CATH_2jktE00 (E:12-582)
3a: CATH_2jktM02 (M:159-284,M:395-435)
3b: CATH_2jktU02 (U:159-284,U:395-435)
3c: CATH_2jktM03 (M:285-394)
3d: CATH_2jktU03 (U:285-394)
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(
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(
)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.60, no name defined]
(6)
Mouse (Mus musculus)
(3)
1a
2jktI00
I:1-142
1b
2jktM01
M:1-141
1c
2jktU01
U:1-141
1d
2jktS00
S:1-142
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Mouse (Mus musculus)
(10)
2a
2jktB00
B:12-582
2b
2jktE00
E:12-582
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1170, no name defined]
(11)
Mouse (Mus musculus)
(2)
3a
2jktM02
M:159-284,M:395-435
3b
2jktU02
U:159-284,U:395-435
3c
2jktM03
M:285-394
3d
2jktU03
U:285-394
[
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]
Pfam Domains
(6, 12)
Info
all PFAM domains
1a: PFAM_Adap_comp_sub_2jktU01 (U:159-435)
1b: PFAM_Adap_comp_sub_2jktU02 (U:159-435)
2a: PFAM_Clat_adaptor_s_2jktS01 (S:1-142)
2b: PFAM_Clat_adaptor_s_2jktS02 (S:1-142)
3a: PFAM_Clat_adaptor_s_2jktU03 (U:1-137)
3b: PFAM_Clat_adaptor_s_2jktU04 (U:1-137)
4a: PFAM_Adaptin_N_2jktE01 (E:12-534)
4b: PFAM_Adaptin_N_2jktE02 (E:12-534)
5a: PFAM_Adaptin_N_2jktL01 (L:29-591)
5b: PFAM_Adaptin_N_2jktL02 (L:29-591)
6a: PFAM_Tcell_CD4_Cterm_2jktQ01 (Q:2-10)
6b: PFAM_Tcell_CD4_Cterm_2jktQ02 (Q:2-10)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Cargo_bd_muHD
(7)
Family
:
Adap_comp_sub
(7)
Rattus norvegicus (Rat)
(5)
1a
Adap_comp_sub-2jktU01
U:159-435
1b
Adap_comp_sub-2jktU02
U:159-435
Clan
:
SNARE
(6)
Family
:
Clat_adaptor_s
(5)
Mus musculus (Mouse)
(5)
2a
Clat_adaptor_s-2jktS01
S:1-142
2b
Clat_adaptor_s-2jktS02
S:1-142
Rattus norvegicus (Rat)
(4)
3a
Clat_adaptor_s-2jktU03
U:1-137
3b
Clat_adaptor_s-2jktU04
U:1-137
Clan
:
TPR
(230)
Family
:
Adaptin_N
(5)
Homo sapiens (Human)
(4)
4a
Adaptin_N-2jktE01
E:12-534
4b
Adaptin_N-2jktE02
E:12-534
Mus musculus (Mouse)
(3)
5a
Adaptin_N-2jktL01
L:29-591
5b
Adaptin_N-2jktL02
L:29-591
Clan
:
no clan defined [family: Tcell_CD4_Cterm]
(4)
Family
:
Tcell_CD4_Cterm
(4)
Homo sapiens (Human)
(4)
6a
Tcell_CD4_Cterm-2jktQ01
Q:2-10
6b
Tcell_CD4_Cterm-2jktQ02
Q:2-10
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Asym.Unit (1.2 MB)
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Biol.Unit 1 (602 KB)
Header - Biol.Unit 1
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