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2JKL
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (77 KB)
Biol.Unit 5 (79 KB)
Biol.Unit 6 (80 KB)
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(1)
Title
:
DRAE ADHESIN IN COMPLEX WITH BROMAMPHENICOL
Authors
:
D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
Date
:
28 Aug 08 (Deposition) - 16 Dec 08 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: C (3x)
Biol. Unit 4: E (3x)
Biol. Unit 5: D (3x)
Biol. Unit 6: F (3x)
Keywords
:
Cell Adhesion, Bromamphenicol, Cell Projection, Fimbrial Adhesin, Upec, Drae, Daec, Adhesin, Fimbrium, Haemagglutinin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
A Structural Study Of The Interaction Between The Dr Haemagglutinin Drae And Derivatives Of Chloramphenicol
Acta Crystallogr. , Sect. D V. 65 513 2009
[
close entry info
]
Hetero Components
(4, 33)
Info
All Hetero Components
1a: BROMAMPHENICOL (BRXa)
1b: BROMAMPHENICOL (BRXb)
1c: BROMAMPHENICOL (BRXc)
1d: BROMAMPHENICOL (BRXd)
1e: BROMAMPHENICOL (BRXe)
1f: BROMAMPHENICOL (BRXf)
1g: BROMAMPHENICOL (BRXg)
1h: BROMAMPHENICOL (BRXh)
2a: CHLORAMPHENICOL (CLMa)
2b: CHLORAMPHENICOL (CLMb)
2c: CHLORAMPHENICOL (CLMc)
2d: CHLORAMPHENICOL (CLMd)
2e: CHLORAMPHENICOL (CLMe)
2f: CHLORAMPHENICOL (CLMf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BRX
8
Ligand/Ion
BROMAMPHENICOL
2
CLM
6
Ligand/Ion
CHLORAMPHENICOL
3
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
4
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:8 , GLY A:9 , THR A:10 , GLY A:24 , ASP A:25 , HOH A:2016 , HOH A:2137 , HOH A:2138 , HOH A:2139
BINDING SITE FOR RESIDUE SO4 A1139
02
AC2
SOFTWARE
ASP A:89 , ASN A:90 , HOH A:2140 , HOH A:2141 , ASP D:52 , GLY D:106 , SER D:107
BINDING SITE FOR RESIDUE SO4 A1140
03
AC3
SOFTWARE
GLU A:17 , LYS A:18 , ARG A:32 , HOH A:2142
BINDING SITE FOR RESIDUE SO4 A1141
04
AC4
SOFTWARE
PRO A:4 , SER A:5 , GLY A:6 , VAL A:15 , PRO A:125 , GLY A:126
BINDING SITE FOR RESIDUE EDO A1142
05
AC5
SOFTWARE
THR B:8 , GLY B:9 , THR B:10 , GLY B:24 , ASP B:25 , HOH B:2136 , HOH B:2137 , HOH B:2138 , HOH B:2139
BINDING SITE FOR RESIDUE SO4 B1139
06
AC6
SOFTWARE
ASP B:89 , ASN B:90 , HOH B:2140 , ASP F:52 , GLY F:106 , SER F:107
BINDING SITE FOR RESIDUE SO4 B1140
07
AC7
SOFTWARE
PRO B:4 , SER B:5 , GLY B:6 , VAL B:15 , PRO B:125 , GLY B:126 , HOH B:2141
BINDING SITE FOR RESIDUE EDO B1141
08
AC8
SOFTWARE
THR C:8 , GLY C:9 , THR C:10 , GLY C:24 , ASP C:25 , HOH C:2036 , HOH C:2145
BINDING SITE FOR RESIDUE SO4 C1139
09
AC9
SOFTWARE
ASP C:89 , ASN C:90 , HOH C:2146 , HOH C:2147 , ASP E:52 , GLY E:106 , SER E:107
BINDING SITE FOR RESIDUE SO4 C1140
10
BC1
SOFTWARE
PRO C:4 , SER C:5 , GLY C:6 , VAL C:15 , THR C:16 , PRO C:125 , GLY C:126
BINDING SITE FOR RESIDUE EDO C1141
11
BC2
SOFTWARE
GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2032 , HOH D:2133 , HOH D:2134 , HOH D:2135
BINDING SITE FOR RESIDUE SO4 D1139
12
BC3
SOFTWARE
ASP A:52 , GLY A:106 , SER A:107 , ASP D:89 , ASN D:90 , HOH D:2136
BINDING SITE FOR RESIDUE SO4 D1140
13
BC4
SOFTWARE
GLU D:17 , LYS D:18 , ARG D:32 , HOH D:2137
BINDING SITE FOR RESIDUE SO4 D1141
14
BC5
SOFTWARE
PRO D:4 , SER D:5 , GLY D:6 , VAL D:15 , THR D:16 , PRO D:125 , GLY D:126 , HOH D:2138
BINDING SITE FOR RESIDUE EDO D1142
15
BC6
SOFTWARE
THR E:8 , GLY E:9 , THR E:10 , GLY E:24 , ASP E:25 , HOH E:2026 , HOH E:2111 , HOH E:2112 , HOH E:2113
BINDING SITE FOR RESIDUE SO4 E1139
16
BC7
SOFTWARE
ASP C:52 , GLY C:106 , SER C:107 , HOH C:2077 , ASP E:89 , ASN E:90 , HOH E:2114
BINDING SITE FOR RESIDUE SO4 E1140
17
BC8
SOFTWARE
PRO E:4 , SER E:5 , GLY E:6 , VAL E:15 , ASN E:127 , THR E:133
BINDING SITE FOR RESIDUE EDO E1141
18
BC9
SOFTWARE
GLY F:9 , THR F:10 , GLY F:24 , ASP F:25 , HOH F:2014 , HOH F:2034 , HOH F:2142
BINDING SITE FOR RESIDUE SO4 F1140
19
CC1
SOFTWARE
ASP B:52 , GLY B:106 , SER B:107 , HOH B:2064 , ASP F:89 , ASN F:90 , HOH F:2140 , HOH F:2141
BINDING SITE FOR RESIDUE SO4 F1141
20
CC2
SOFTWARE
PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26
BINDING SITE FOR RESIDUE BRX A1143
21
CC3
SOFTWARE
PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26
BINDING SITE FOR RESIDUE CLM A1144
22
CC4
SOFTWARE
GLY B:33 , GLN B:34 , THR B:36 , GLN C:55 , ASP C:104 , VAL C:105
BINDING SITE FOR RESIDUE BRX B1142
23
CC5
SOFTWARE
GLY B:42 , PRO B:43 , GLY B:113 , ILE B:114 , TYR B:115 , HOH B:2144 , ARG F:22 , LEU F:26
BINDING SITE FOR RESIDUE BRX B1143
24
CC6
SOFTWARE
GLY B:42 , PRO B:43 , ILE B:111 , ILE B:114 , TYR B:115 , HOH B:2144 , ARG F:22 , LEU F:26
BINDING SITE FOR RESIDUE CLM B1144
25
CC7
SOFTWARE
PRO C:40 , GLY C:42 , PRO C:43 , ILE C:111 , GLY C:113 , ILE C:114 , TYR C:115 , ARG E:22 , LEU E:26
BINDING SITE FOR RESIDUE BRX C1142
26
CC8
SOFTWARE
PRO C:40 , GLY C:42 , PRO C:43 , ILE C:111 , GLY C:113 , ILE C:114 , TYR C:115 , ARG E:22 , LEU E:26
BINDING SITE FOR RESIDUE CLM C1143
27
CC9
SOFTWARE
GLY D:33 , GLN D:34 , THR D:36 , GLN F:55 , ASP F:104 , VAL F:105
BINDING SITE FOR RESIDUE BRX D1143
28
DC1
SOFTWARE
ARG A:22 , LEU A:26 , PRO D:40 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115
BINDING SITE FOR RESIDUE BRX D1144
29
DC2
SOFTWARE
ARG A:22 , LEU A:26 , GLY D:42 , PRO D:43 , ILE D:111 , ILE D:114 , TYR D:115
BINDING SITE FOR RESIDUE CLM D1145
30
DC3
SOFTWARE
LEU C:26 , HOH C:2056 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114
BINDING SITE FOR RESIDUE BRX E1142
31
DC4
SOFTWARE
LEU C:26 , HOH C:2056 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114 , TYR E:115
BINDING SITE FOR RESIDUE CLM E1143
32
DC5
SOFTWARE
LEU B:26 , GLY F:42 , PRO F:43 , THR F:88 , ILE F:111 , GLY F:113 , ILE F:114 , TYR F:115 , HOH F:2143
BINDING SITE FOR RESIDUE BRX F1142
33
DC6
SOFTWARE
LEU B:26 , PRO F:40 , GLY F:42 , PRO F:43 , ILE F:111 , GLY F:113 , ILE F:114 , TYR F:115 , HOH F:2143
BINDING SITE FOR RESIDUE CLM F1143
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DRAA_ECOLX_001 (R22Y, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DRAA_ECOLX_001
*
R
43
Y
DRAA_ECOLX
---
---
A/B/C/D/E/F
R
22
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2jkla_ (A:)
1b: SCOP_d2jkle_ (E:)
1c: SCOP_d2jklf_ (F:)
1d: SCOP_d2jklb_ (B:)
1e: SCOP_d2jklc_ (C:)
1f: SCOP_d2jkld_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Dr-family adhesin
(11)
Protein domain
:
DraA/Afimbrial adhesin Afa-III
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d2jkla_
A:
1b
d2jkle_
E:
1c
d2jklf_
F:
1d
d2jklb_
B:
1e
d2jklc_
C:
1f
d2jkld_
D:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2jklA00 (A:0-138)
1b: CATH_2jklB00 (B:0-138)
1c: CATH_2jklC00 (C:0-138)
1d: CATH_2jklE00 (E:0-138)
1e: CATH_2jklD00 (D:0-138)
1f: CATH_2jklF00 (F:0-139)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Afimbrial adhesin afa-iii.
(12)
Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h. Cell_line: m15.
(4)
1a
2jklA00
A:0-138
1b
2jklB00
B:0-138
1c
2jklC00
C:0-138
1d
2jklE00
E:0-138
1e
2jklD00
D:0-138
1f
2jklF00
F:0-139
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Adhesin_Dr_2jklF01 (F:2-139)
1b: PFAM_Adhesin_Dr_2jklF02 (F:2-139)
1c: PFAM_Adhesin_Dr_2jklF03 (F:2-139)
1d: PFAM_Adhesin_Dr_2jklF04 (F:2-139)
1e: PFAM_Adhesin_Dr_2jklF05 (F:2-139)
1f: PFAM_Adhesin_Dr_2jklF06 (F:2-139)
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)
Clan
:
Adhesin
(36)
Family
:
Adhesin_Dr
(9)
Escherichia coli
(9)
1a
Adhesin_Dr-2jklF01
F:2-139
1b
Adhesin_Dr-2jklF02
F:2-139
1c
Adhesin_Dr-2jklF03
F:2-139
1d
Adhesin_Dr-2jklF04
F:2-139
1e
Adhesin_Dr-2jklF05
F:2-139
1f
Adhesin_Dr-2jklF06
F:2-139
[
close Pfam info
]
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