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2JKL
Biol. Unit 5
Info
Asym.Unit (160 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (77 KB)
Biol.Unit 5 (79 KB)
Biol.Unit 6 (80 KB)
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(1)
Title
:
DRAE ADHESIN IN COMPLEX WITH BROMAMPHENICOL
Authors
:
D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
Date
:
28 Aug 08 (Deposition) - 16 Dec 08 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: C (3x)
Biol. Unit 4: E (3x)
Biol. Unit 5: D (3x)
Biol. Unit 6: F (3x)
Keywords
:
Cell Adhesion, Bromamphenicol, Cell Projection, Fimbrial Adhesin, Upec, Drae, Daec, Adhesin, Fimbrium, Haemagglutinin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
A Structural Study Of The Interaction Between The Dr Haemagglutinin Drae And Derivatives Of Chloramphenicol
Acta Crystallogr. , Sect. D V. 65 513 2009
[
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: BROMAMPHENICOL (BRXa)
1b: BROMAMPHENICOL (BRXb)
1c: BROMAMPHENICOL (BRXc)
1d: BROMAMPHENICOL (BRXd)
1e: BROMAMPHENICOL (BRXe)
1f: BROMAMPHENICOL (BRXf)
1g: BROMAMPHENICOL (BRXg)
1h: BROMAMPHENICOL (BRXh)
2a: CHLORAMPHENICOL (CLMa)
2b: CHLORAMPHENICOL (CLMb)
2c: CHLORAMPHENICOL (CLMc)
2d: CHLORAMPHENICOL (CLMd)
2e: CHLORAMPHENICOL (CLMe)
2f: CHLORAMPHENICOL (CLMf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BRX
6
Ligand/Ion
BROMAMPHENICOL
2
CLM
3
Ligand/Ion
CHLORAMPHENICOL
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC2 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC9 (SOFTWARE)
09: DC1 (SOFTWARE)
10: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ASP A:89 , ASN A:90 , HOH A:2140 , HOH A:2141 , ASP D:52 , GLY D:106 , SER D:107
BINDING SITE FOR RESIDUE SO4 A1140
02
BC2
SOFTWARE
GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2032 , HOH D:2133 , HOH D:2134 , HOH D:2135
BINDING SITE FOR RESIDUE SO4 D1139
03
BC3
SOFTWARE
ASP A:52 , GLY A:106 , SER A:107 , ASP D:89 , ASN D:90 , HOH D:2136
BINDING SITE FOR RESIDUE SO4 D1140
04
BC4
SOFTWARE
GLU D:17 , LYS D:18 , ARG D:32 , HOH D:2137
BINDING SITE FOR RESIDUE SO4 D1141
05
BC5
SOFTWARE
PRO D:4 , SER D:5 , GLY D:6 , VAL D:15 , THR D:16 , PRO D:125 , GLY D:126 , HOH D:2138
BINDING SITE FOR RESIDUE EDO D1142
06
CC2
SOFTWARE
PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26
BINDING SITE FOR RESIDUE BRX A1143
07
CC3
SOFTWARE
PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26
BINDING SITE FOR RESIDUE CLM A1144
08
CC9
SOFTWARE
GLY D:33 , GLN D:34 , THR D:36 , GLN F:55 , ASP F:104 , VAL F:105
BINDING SITE FOR RESIDUE BRX D1143
09
DC1
SOFTWARE
ARG A:22 , LEU A:26 , PRO D:40 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115
BINDING SITE FOR RESIDUE BRX D1144
10
DC2
SOFTWARE
ARG A:22 , LEU A:26 , GLY D:42 , PRO D:43 , ILE D:111 , ILE D:114 , TYR D:115
BINDING SITE FOR RESIDUE CLM D1145
[
close Site info
]
SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_DRAA_ECOLX_001 (R22Y, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DRAA_ECOLX_001
*
R
43
Y
DRAA_ECOLX
---
---
D
R
22
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2jkla_ (A:)
1b: SCOP_d2jkle_ (E:)
1c: SCOP_d2jklf_ (F:)
1d: SCOP_d2jklb_ (B:)
1e: SCOP_d2jklc_ (C:)
1f: SCOP_d2jkld_ (D:)
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Protein Domains
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)
(
)
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Dr-family adhesin
(11)
Protein domain
:
DraA/Afimbrial adhesin Afa-III
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d2jkla_
A:
1b
d2jkle_
E:
1c
d2jklf_
F:
1d
d2jklb_
B:
1e
d2jklc_
C:
1f
d2jkld_
D:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2jklA00 (A:0-138)
1b: CATH_2jklB00 (B:0-138)
1c: CATH_2jklC00 (C:0-138)
1d: CATH_2jklE00 (E:0-138)
1e: CATH_2jklD00 (D:0-138)
1f: CATH_2jklF00 (F:0-139)
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)
(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Afimbrial adhesin afa-iii.
(12)
Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h. Cell_line: m15.
(4)
1a
2jklA00
A:0-138
1b
2jklB00
B:0-138
1c
2jklC00
C:0-138
1d
2jklE00
E:0-138
1e
2jklD00
D:0-138
1f
2jklF00
F:0-139
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Adhesin_Dr_2jklF01 (F:2-139)
1b: PFAM_Adhesin_Dr_2jklF02 (F:2-139)
1c: PFAM_Adhesin_Dr_2jklF03 (F:2-139)
1d: PFAM_Adhesin_Dr_2jklF04 (F:2-139)
1e: PFAM_Adhesin_Dr_2jklF05 (F:2-139)
1f: PFAM_Adhesin_Dr_2jklF06 (F:2-139)
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)
Clan
:
Adhesin
(36)
Family
:
Adhesin_Dr
(9)
Escherichia coli
(9)
1a
Adhesin_Dr-2jklF01
F:2-139
1b
Adhesin_Dr-2jklF02
F:2-139
1c
Adhesin_Dr-2jklF03
F:2-139
1d
Adhesin_Dr-2jklF04
F:2-139
1e
Adhesin_Dr-2jklF05
F:2-139
1f
Adhesin_Dr-2jklF06
F:2-139
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