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2JJB
Biol. Unit 2
Info
Asym.Unit (379 KB)
Biol.Unit 1 (192 KB)
Biol.Unit 2 (186 KB)
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(1)
Title
:
FAMILY 37 TREHALASE FROM ESCHERICHIA COLI IN COMPLEX WITH CASUARINE-6-O-ALPHA-GLUCOPYRANOSE
Authors
:
T. M. Gloster, S. Roberts, G. J. Davies, F. Cardona, C. Parmeggiani, C. Bonaccini, P. Gratteri, L. Sim, D. R. Rose, A. Goti
Date
:
28 Mar 08 (Deposition) - 13 Jan 09 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Cardona, C. Parmeggiani, E. Faggi, C. Bonaccini, P. Gratteri, L. Sim, T. M. Gloster, S. Roberts, G. J. Davies, D. R. Rose, A. Goti
Total Syntheses Of Casuarine And Its 6-O-Alpha- Glucoside: Complementary Inhibition Towards Glycoside Hydrolases Of The Gh31 And Gh37 Families.
Chemistry V. 15 1627 2009
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: CASUARINE (3CUa)
1b: CASUARINE (3CUb)
1c: CASUARINE (3CUc)
1d: CASUARINE (3CUd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4ag: SULFATE ION (SO4ag)
4ah: SULFATE ION (SO4ah)
4ai: SULFATE ION (SO4ai)
4aj: SULFATE ION (SO4aj)
4ak: SULFATE ION (SO4ak)
4al: SULFATE ION (SO4al)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3CU
2
Ligand/Ion
CASUARINE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
4
SO4
15
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC5 (SOFTWARE)
17: EC2 (SOFTWARE)
18: EC3 (SOFTWARE)
19: EC4 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
PHE B:153 , TYR B:157 , TRP B:159 , ASP B:160 , GLN B:207 , GLY B:310 , ASP B:312 , TRP B:447 , PHE B:518 , TRP B:520 , GLC B:1546 , HOH B:2289 , HOH B:2409
BINDING SITE FOR RESIDUE 3CU B1545
02
AC4
SOFTWARE
ARG B:152 , TYR B:157 , ASN B:196 , TYR B:202 , ARG B:205 , GLN B:207 , ARG B:277 , GLU B:279 , SER B:280 , ALA B:307 , ASP B:312 , 3CU B:1545 , SO4 B:1547 , HOH B:2288
BINDING SITE FOR RESIDUE GLC B1546
03
AC7
SOFTWARE
PHE D:153 , TRP D:159 , ASP D:160 , GLN D:207 , GLY D:310 , ASP D:312 , TRP D:447 , TYR D:512 , PHE D:518 , TRP D:520 , GLC D:1548 , HOH D:2236 , HOH D:2330
BINDING SITE FOR RESIDUE 3CU D1547
04
AC8
SOFTWARE
ARG D:152 , TYR D:157 , ASN D:196 , TYR D:202 , ARG D:205 , GLN D:207 , ARG D:277 , GLU D:279 , SER D:280 , ALA D:307 , ASP D:312 , 3CU D:1547 , SO4 D:1549 , HOH D:2331
BINDING SITE FOR RESIDUE GLC D1548
05
BC1
SOFTWARE
ARG B:277 , SER B:280 , ASP B:312 , PHE B:313 , GLC B:1546 , HOH B:2289 , HOH B:2447 , HOH B:2448
BINDING SITE FOR RESIDUE SO4 B1547
06
BC3
SOFTWARE
ARG D:277 , SER D:280 , ASP D:312 , PHE D:313 , TYR D:512 , GLC D:1548 , HOH D:2236 , HOH D:2332 , HOH D:2333 , HOH D:2334
BINDING SITE FOR RESIDUE SO4 D1549
07
BC4
SOFTWARE
GLN B:383 , LEU C:260 , GLN C:261 , TYR C:390 , HIS C:395 , HOH C:2442 , HOH C:2443 , HOH C:2444
BINDING SITE FOR RESIDUE SO4 C1549
08
BC7
SOFTWARE
PRO A:110 , LEU B:260 , GLN B:261 , TYR B:390 , HIS B:395 , HOH B:2449 , HOH B:2450 , HOH B:2451 , HOH B:2452
BINDING SITE FOR RESIDUE SO4 B1548
09
BC9
SOFTWARE
HIS D:173 , ASP D:175 , LYS D:176 , HOH D:2335
BINDING SITE FOR RESIDUE SO4 D1550
10
CC1
SOFTWARE
LEU D:260 , GLN D:261 , TYR D:390 , HIS D:395 , HOH D:2336 , HOH D:2337
BINDING SITE FOR RESIDUE SO4 D1551
11
CC5
SOFTWARE
LYS B:255 , ARG B:256 , ASP B:272 , HOH B:2177 , HOH B:2453 , ARG D:273
BINDING SITE FOR RESIDUE SO4 B1549
12
CC6
SOFTWARE
ARG B:273 , ASP D:243 , LYS D:255 , ARG D:256 , ASP D:272 , HOH D:2142 , HOH D:2338 , HOH D:2339 , HOH D:2340
BINDING SITE FOR RESIDUE SO4 D1552
13
CC8
SOFTWARE
HIS B:173 , TRP B:174 , ASP B:175 , LYS B:176 , HOH B:2454
BINDING SITE FOR RESIDUE SO4 B1550
14
CC9
SOFTWARE
HIS B:92 , ASN B:95 , HIS B:221 , HOH B:2455
BINDING SITE FOR RESIDUE SO4 B1551
15
DC1
SOFTWARE
ASP A:224 , LYS A:228 , ARG D:128 , SER D:129
BINDING SITE FOR RESIDUE SO4 D1553
16
DC5
SOFTWARE
GLY B:356 , ASP B:357 , ASN B:358 , ALA B:359 , HOH B:2316 , HOH B:2456
BINDING SITE FOR RESIDUE SO4 B1552
17
EC2
SOFTWARE
SER D:129 , THR D:130 , GLU D:131 , ASN D:132
BINDING SITE FOR RESIDUE SO4 D1554
18
EC3
SOFTWARE
ARG D:398 , ASN D:399 , GLN D:400 , HOH D:2269 , HOH D:2342
BINDING SITE FOR RESIDUE SO4 D1555
19
EC4
SOFTWARE
ARG B:398 , ASN B:399 , GLN B:400 , HOH B:2458 , HOH B:2459
BINDING SITE FOR RESIDUE SO4 B1553
20
EC6
SOFTWARE
GLY D:112 , LYS D:492 , HOH D:2343
BINDING SITE FOR RESIDUE SO4 D1556
21
EC7
SOFTWARE
ASN B:358 , HOH B:2318 , SER C:129 , THR C:130 , GLU C:131 , ASN C:132
BINDING SITE FOR RESIDUE SO4 C1558
22
FC2
SOFTWARE
GLN B:235 , TYR B:364 , HOH B:2460 , HOH B:2461 , ARG D:80
BINDING SITE FOR RESIDUE EDO B1554
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TREHALASE_1 (B:149-162,D:149-162)
2: TREHALASE_2 (B:446-455,D:446-455)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TREHALASE_1
PS00927
Trehalase signature 1.
TREA_ECOLI
149-162
2
-
B:149-162
-
D:149-162
2
TREHALASE_2
PS00928
Trehalase signature 2.
TREA_ECOLI
446-455
2
-
B:446-455
-
D:446-455
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jjba_ (A:)
1b: SCOP_d2jjbb_ (B:)
1c: SCOP_d2jjbc_ (C:)
1d: SCOP_d2jjbd_ (D:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Trehalase-like
(4)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d2jjba_
A:
1b
d2jjbb_
B:
1c
d2jjbc_
C:
1d
d2jjbd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Trehalase_2jjbD01 (D:55-533)
1b: PFAM_Trehalase_2jjbD02 (D:55-533)
1c: PFAM_Trehalase_2jjbD03 (D:55-533)
1d: PFAM_Trehalase_2jjbD04 (D:55-533)
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Clans
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Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Trehalase
(5)
Escherichia coli (strain K12)
(4)
1a
Trehalase-2jjbD01
D:55-533
1b
Trehalase-2jjbD02
D:55-533
1c
Trehalase-2jjbD03
D:55-533
1d
Trehalase-2jjbD04
D:55-533
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Asymmetric Unit 1
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Asym.Unit (379 KB)
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