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2JJB
Biol. Unit 1
Info
Asym.Unit (379 KB)
Biol.Unit 1 (192 KB)
Biol.Unit 2 (186 KB)
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(1)
Title
:
FAMILY 37 TREHALASE FROM ESCHERICHIA COLI IN COMPLEX WITH CASUARINE-6-O-ALPHA-GLUCOPYRANOSE
Authors
:
T. M. Gloster, S. Roberts, G. J. Davies, F. Cardona, C. Parmeggiani, C. Bonaccini, P. Gratteri, L. Sim, D. R. Rose, A. Goti
Date
:
28 Mar 08 (Deposition) - 13 Jan 09 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Cardona, C. Parmeggiani, E. Faggi, C. Bonaccini, P. Gratteri, L. Sim, T. M. Gloster, S. Roberts, G. J. Davies, D. R. Rose, A. Goti
Total Syntheses Of Casuarine And Its 6-O-Alpha- Glucoside: Complementary Inhibition Towards Glycoside Hydrolases Of The Gh31 And Gh37 Families.
Chemistry V. 15 1627 2009
[
close entry info
]
Hetero Components
(4, 29)
Info
All Hetero Components
1a: CASUARINE (3CUa)
1b: CASUARINE (3CUb)
1c: CASUARINE (3CUc)
1d: CASUARINE (3CUd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4ag: SULFATE ION (SO4ag)
4ah: SULFATE ION (SO4ah)
4ai: SULFATE ION (SO4ai)
4aj: SULFATE ION (SO4aj)
4ak: SULFATE ION (SO4ak)
4al: SULFATE ION (SO4al)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3CU
2
Ligand/Ion
CASUARINE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
4
SO4
23
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC7 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC6 (SOFTWARE)
21: DC7 (SOFTWARE)
22: DC8 (SOFTWARE)
23: DC9 (SOFTWARE)
24: EC1 (SOFTWARE)
25: EC5 (SOFTWARE)
26: EC7 (SOFTWARE)
27: EC8 (SOFTWARE)
28: EC9 (SOFTWARE)
29: FC1 (SOFTWARE)
30: FC3 (SOFTWARE)
31: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:153 , TYR A:157 , TRP A:159 , ASP A:160 , GLN A:207 , GLY A:310 , ASP A:312 , GLN A:446 , TRP A:447 , TYR A:512 , PHE A:518 , TRP A:520 , GLC A:1548 , HOH A:2345 , HOH A:2461
BINDING SITE FOR RESIDUE 3CU A1547
02
AC2
SOFTWARE
ARG A:152 , TYR A:157 , ASN A:196 , TYR A:202 , ARG A:205 , GLN A:207 , ARG A:277 , GLU A:279 , ALA A:307 , ASP A:312 , TYR A:512 , 3CU A:1547 , SO4 A:1549 , HOH A:2343
BINDING SITE FOR RESIDUE GLC A1548
03
AC5
SOFTWARE
PHE C:153 , TYR C:157 , TRP C:159 , ASP C:160 , GLN C:207 , GLY C:310 , ASP C:312 , TRP C:447 , TYR C:512 , PHE C:518 , TRP C:520 , GLC C:1547 , HOH C:2293 , HOH C:2404
BINDING SITE FOR RESIDUE 3CU C1546
04
AC6
SOFTWARE
ARG C:152 , PHE C:153 , TYR C:157 , ASN C:196 , TYR C:202 , ARG C:205 , GLN C:207 , ARG C:277 , GLU C:279 , ALA C:307 , ASP C:312 , 3CU C:1546 , SO4 C:1548 , HOH C:2291
BINDING SITE FOR RESIDUE GLC C1547
05
AC9
SOFTWARE
ARG A:277 , SER A:280 , ASP A:312 , PHE A:313 , TYR A:512 , GLC A:1548 , HOH A:2345 , HOH A:2501 , HOH A:2502
BINDING SITE FOR RESIDUE SO4 A1549
06
BC2
SOFTWARE
ARG C:277 , SER C:280 , ASP C:312 , PHE C:313 , TYR C:512 , GLC C:1547 , HOH C:2293 , HOH C:2439 , HOH C:2441
BINDING SITE FOR RESIDUE SO4 C1548
07
BC4
SOFTWARE
GLN B:383 , LEU C:260 , GLN C:261 , TYR C:390 , HIS C:395 , HOH C:2442 , HOH C:2443 , HOH C:2444
BINDING SITE FOR RESIDUE SO4 C1549
08
BC5
SOFTWARE
ASP A:489 , ARG A:490 , ARG C:398 , ASN C:399 , GLN C:400 , HOH C:2445 , HOH C:2446 , HOH C:2447 , HOH C:2448
BINDING SITE FOR RESIDUE SO4 C1550
09
BC6
SOFTWARE
HIS C:173 , ASP C:175 , LYS C:176 , HOH C:2167 , HOH C:2449
BINDING SITE FOR RESIDUE SO4 C1551
10
BC7
SOFTWARE
PRO A:110 , LEU B:260 , GLN B:261 , TYR B:390 , HIS B:395 , HOH B:2449 , HOH B:2450 , HOH B:2451 , HOH B:2452
BINDING SITE FOR RESIDUE SO4 B1548
11
BC8
SOFTWARE
LEU A:260 , GLN A:261 , TYR A:390 , HIS A:395 , HOH A:2503 , HOH A:2504 , HOH A:2505 , HOH A:2506
BINDING SITE FOR RESIDUE SO4 A1550
12
CC2
SOFTWARE
LYS A:255 , ARG A:256 , ASP A:272 , HOH A:2507 , HOH A:2508 , ILE C:42 , ARG C:273
BINDING SITE FOR RESIDUE SO4 A1551
13
CC3
SOFTWARE
HIS A:173 , ASP A:175 , LYS A:176 , HOH A:2205 , HOH A:2509
BINDING SITE FOR RESIDUE SO4 A1552
14
CC4
SOFTWARE
ARG A:273 , LYS C:255 , ARG C:256 , ASP C:272 , HOH C:2187 , HOH C:2450 , HOH C:2451
BINDING SITE FOR RESIDUE SO4 C1552
15
CC7
SOFTWARE
CYS A:539 , ASP A:540 , ASN A:541 , GLN C:383
BINDING SITE FOR RESIDUE SO4 A1553
16
DC1
SOFTWARE
ASP A:224 , LYS A:228 , ARG D:128 , SER D:129
BINDING SITE FOR RESIDUE SO4 D1553
17
DC2
SOFTWARE
HIS A:479 , ARG A:546 , HOH A:2510
BINDING SITE FOR RESIDUE SO4 A1554
18
DC3
SOFTWARE
GLY C:356 , ASP C:357 , ASN C:358 , ALA C:359
BINDING SITE FOR RESIDUE SO4 C1553
19
DC4
SOFTWARE
GLU A:111 , GLY A:112 , LYS C:396
BINDING SITE FOR RESIDUE SO4 C1554
20
DC6
SOFTWARE
LEU C:248 , GLN C:249 , ALA C:250 , LYS C:259 , HOH C:2452 , HOH C:2453 , HOH C:2455
BINDING SITE FOR RESIDUE SO4 C1555
21
DC7
SOFTWARE
GLN A:249 , ALA A:250 , LYS A:259 , HOH A:2512
BINDING SITE FOR RESIDUE SO4 A1555
22
DC8
SOFTWARE
ASP A:382 , ASP A:417 , ARG A:418 , HOH A:2410
BINDING SITE FOR RESIDUE SO4 A1556
23
DC9
SOFTWARE
CYS C:539 , ASP C:540 , ASN C:541 , HOH C:2456
BINDING SITE FOR RESIDUE SO4 C1556
24
EC1
SOFTWARE
PRO A:513 , LEU A:514 , HOH A:2513 , HOH A:2515
BINDING SITE FOR RESIDUE SO4 A1557
25
EC5
SOFTWARE
HIS C:92 , ASN C:95 , HOH C:2457
BINDING SITE FOR RESIDUE SO4 C1557
26
EC7
SOFTWARE
ASN B:358 , HOH B:2318 , SER C:129 , THR C:130 , GLU C:131 , ASN C:132
BINDING SITE FOR RESIDUE SO4 C1558
27
EC8
SOFTWARE
LEU A:213 , LYS A:343 , TYR A:410 , VAL A:411 , HOH A:2516 , HOH A:2517
BINDING SITE FOR RESIDUE SO4 A1558
28
EC9
SOFTWARE
PRO A:534 , LYS A:535 , HOH A:2518 , HOH A:2520
BINDING SITE FOR RESIDUE SO4 A1559
29
FC1
SOFTWARE
ARG A:398 , ASN A:399 , GLN A:400 , HOH A:2397 , HOH A:2522
BINDING SITE FOR RESIDUE SO4 A1560
30
FC3
SOFTWARE
ALA A:544 , GLN C:400 , LEU C:401 , HIS C:429 , HOH C:2378 , HOH C:2458
BINDING SITE FOR RESIDUE EDO C1559
31
FC4
SOFTWARE
HIS A:486 , ARG A:490 , HOH A:2468 , HOH A:2523 , PRO C:321 , HOH C:2296 , HOH C:2445
BINDING SITE FOR RESIDUE EDO A1561
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TREHALASE_1 (A:149-162,C:149-162)
2: TREHALASE_2 (A:446-455,C:446-455)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TREHALASE_1
PS00927
Trehalase signature 1.
TREA_ECOLI
149-162
2
A:149-162
-
C:149-162
-
2
TREHALASE_2
PS00928
Trehalase signature 2.
TREA_ECOLI
446-455
2
A:446-455
-
C:446-455
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2jjba_ (A:)
1b: SCOP_d2jjbb_ (B:)
1c: SCOP_d2jjbc_ (C:)
1d: SCOP_d2jjbd_ (D:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Trehalase-like
(4)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d2jjba_
A:
1b
d2jjbb_
B:
1c
d2jjbc_
C:
1d
d2jjbd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Trehalase_2jjbD01 (D:55-533)
1b: PFAM_Trehalase_2jjbD02 (D:55-533)
1c: PFAM_Trehalase_2jjbD03 (D:55-533)
1d: PFAM_Trehalase_2jjbD04 (D:55-533)
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(
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(
)
Clan
:
6_Hairpin
(120)
Family
:
Trehalase
(5)
Escherichia coli (strain K12)
(4)
1a
Trehalase-2jjbD01
D:55-533
1b
Trehalase-2jjbD02
D:55-533
1c
Trehalase-2jjbD03
D:55-533
1d
Trehalase-2jjbD04
D:55-533
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Asymmetric Unit 1
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Asym.Unit (379 KB)
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