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2JJ3
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
ESTROGEN RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A BENZOPYRAN AGONIST
Authors
:
B. H. Norman, T. I. Richardson, J. A. Dodge, L. A. Pfeifer, G. L. Durst, Y. Wang, J. D. Durbin, V. Krishnan, S. R. Dinn, S. Liu, J. E. Reilly, K. T. Ryter
Date
:
03 Jul 07 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Phosphorylation, Steroid-Binding, Nuclear Receptor, Transcription Regulation, Alternative Splicing, Ligand Binding Domain, Zinc, Nucleus, Receptor, Zinc-Finger, Dna-Binding, Transcription, Metal-Binding, Lipid-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. H. Norman, T. I. Richardson, J. A. Dodge, L. A. Pfeifer, G. L. Durst, Y. Wang, J. D. Durbin, V. Krishnan, S. R. Dinn, S. Liu, J. E. Reilly, K. T. Ryter
Benzopyrans As Selective Estrogen Receptor Beta Agonists (Serbas). Part 4: Functionalization Of The Benzopyran A-Ring.
Bioorg. Med. Chem. Lett. V. 17 5082 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6... (JJ3a)
1b: (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6... (JJ3b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
JJ3
2
Ligand/Ion
(3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6-(METHOXYMETHYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:295 , THR A:299 , ALA A:302 , GLU A:305 , LEU A:339 , ARG A:346 , PHE A:356 , ILE A:376 , PHE A:377 , GLY A:472 , HIS A:475 , LEU A:476 , VAL A:487 , HOH A:2005
BINDING SITE FOR RESIDUE JJ3 A1499
2
AC2
SOFTWARE
MET B:295 , THR B:299 , ALA B:302 , GLU B:305 , ARG B:346 , PHE B:356 , PHE B:377 , GLY B:472 , HIS B:475 , LEU B:476 , VAL B:487 , HOH B:2012
BINDING SITE FOR RESIDUE JJ3 B1501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.6 (A:261-318 (gaps) | B:260-318 (gaps...)
Exon 1.8 (A:318-364 | B:318-364)
Exon 1.9 (A:364-409 | B:364-409)
Exon 1.10 (A:409-469 (gaps) | B:409-469 (gaps...)
Exon 1.11b (A:469-499 (gaps) | B:469-501 (gaps...)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11b
6: Boundary 1.11b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000341099
2b
ENSE00001848078
chr14:
64761078-64760751
328
ESR2_HUMAN
-
0
0
-
-
1.3
ENST00000341099
3
ENSE00001193559
chr14:
64749793-64749342
452
ESR2_HUMAN
1-121
121
0
-
-
1.4
ENST00000341099
4
ENSE00001170893
chr14:
64746871-64746699
173
ESR2_HUMAN
121-179
59
0
-
-
1.5
ENST00000341099
5
ENSE00001750014
chr14:
64735629-64735513
117
ESR2_HUMAN
179-218
40
0
-
-
1.6
ENST00000341099
6
ENSE00001170836
chr14:
64727466-64727167
300
ESR2_HUMAN
218-318
101
2
A:261-318 (gaps)
B:260-318 (gaps)
58
59
1.8
ENST00000341099
8
ENSE00001170869
chr14:
64724082-64723944
139
ESR2_HUMAN
318-364
47
2
A:318-364
B:318-364
47
47
1.9
ENST00000341099
9
ENSE00001193507
chr14:
64716397-64716264
134
ESR2_HUMAN
364-409
46
2
A:364-409
B:364-409
46
46
1.10
ENST00000341099
10
ENSE00001096736
chr14:
64701868-64701688
181
ESR2_HUMAN
409-469
61
2
A:409-469 (gaps)
B:409-469 (gaps)
61
61
1.11b
ENST00000341099
11b
ENSE00001564600
chr14:
64700041-64699806
236
ESR2_HUMAN
469-530
62
2
A:469-499 (gaps)
B:469-501 (gaps)
31
33
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2jj3a_ (A:)
1b: SCOP_d2jj3b_ (B:)
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Class
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All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d2jj3a_
A:
1b
d2jj3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2jj3B00 (B:260-501)
1b: CATH_2jj3A00 (A:261-499)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2jj3B00
B:260-501
1b
2jj3A00
A:261-499
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2jj3B01 (B:277-494)
1b: PFAM_Hormone_recep_2jj3B02 (B:277-494)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-2jj3B01
B:277-494
1b
Hormone_recep-2jj3B02
B:277-494
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Asymmetric Unit 1
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