PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2JJ1
Biol. Unit 1
Info
Asym.Unit (978 KB)
Biol.Unit 1 (485 KB)
Biol.Unit 2 (488 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE STRUCTURE OF F1-ATPASE INHIBITED BY PICEATANNOL.
Authors
:
J. R. Gledhill, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Date
:
03 Jul 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Biol. Unit 2: H,I,J,K,L,M,N (1x)
Keywords
:
Hydrolase, Mitochondrion, Atp-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Gledhill, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Mechanism Of Inhibition Of Bovine F1-Atpase By Resveratrol And Related Polyphenols.
Proc. Nat. Acad. Sci. Usa V. 104 13632 2007
[
close entry info
]
Hetero Components
(6, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
2d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
2e: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPe)
2f: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPf)
2g: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPg)
2h: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPh)
3a: AZIDE ION (AZIa)
3b: AZIDE ION (AZIb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
5i: MAGNESIUM ION (MGi)
5j: MAGNESIUM ION (MGj)
6a: PICEATANNOL (PITa)
6b: PICEATANNOL (PITb)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ANP
4
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
AZI
1
Ligand/Ion
AZIDE ION
4
GOL
6
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
PIT
1
Ligand/Ion
PICEATANNOL
7
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , ARG A:362 , PRO A:363 , GLN A:430 , GLN A:432 , MG A:1512 , HOH A:2033 , HOH A:2065 , HOH A:2066 , HOH A:2100 , HOH A:2101
BINDING SITE FOR RESIDUE ANP A1511
02
AC2
SOFTWARE
THR A:176 , ANP A:1511 , HOH A:2033 , HOH A:2051 , HOH A:2101
BINDING SITE FOR RESIDUE MG A1512
03
AC3
SOFTWARE
GLU A:50 , TYR A:244 , LEU A:245 , TYR A:248 , ARG A:304
BINDING SITE FOR RESIDUE GOL A1513
04
AC4
SOFTWARE
GLY A:290 , ARG A:291 , TYR A:294 , PRO A:295 , GLY A:296 , TYR A:337 , SER E:266 , GLY E:280 , HOH E:2047
BINDING SITE FOR RESIDUE GOL A1514
05
AC5
SOFTWARE
ARG B:171 , GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , PHE B:357 , GLN B:430 , GLN B:432 , MG B:1511 , HOH B:2035 , HOH B:2050 , HOH B:2064 , HOH B:2081 , ASP E:359
BINDING SITE FOR RESIDUE ANP B1510
06
AC6
SOFTWARE
THR B:176 , ANP B:1510 , HOH B:2035 , HOH B:2050 , HOH B:2081
BINDING SITE FOR RESIDUE MG B1511
07
AC7
SOFTWARE
VAL B:129 , GLY B:130 , TYR B:244 , TYR B:248 , ARG B:304
BINDING SITE FOR RESIDUE GOL B1512
08
AC8
SOFTWARE
GLY B:290 , ARG B:291 , TYR B:294 , PRO B:295 , GLY B:296 , TYR B:337 , SER F:266 , VAL F:279 , TYR F:281
BINDING SITE FOR RESIDUE GOL B1513
09
AC9
SOFTWARE
ARG C:171 , GLN C:172 , THR C:173 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , PHE C:357 , ARG C:362 , PRO C:363 , GLN C:430 , GLN C:432 , MG C:1512 , HOH C:2102 , HOH C:2103 , HOH C:2104 , HOH C:2105 , HOH C:2106 , TYR F:368 , HOH F:2076
BINDING SITE FOR RESIDUE ANP C1511
10
BC1
SOFTWARE
THR C:176 , ANP C:1511 , HOH C:2043 , HOH C:2103 , HOH C:2106
BINDING SITE FOR RESIDUE MG C1512
11
BC2
SOFTWARE
MET C:62 , VAL C:129 , GLY C:130 , TYR C:244 , ARG C:304 , HOH C:2107
BINDING SITE FOR RESIDUE GOL C1513
12
BC3
SOFTWARE
SER C:372 , ARG C:373 , GLY D:157 , GLY D:159 , VAL D:160 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , TYR D:345 , PHE D:418 , ALA D:421 , PHE D:424 , MG D:1477 , AZI D:1478 , HOH D:2086 , HOH D:2095 , HOH D:2096 , HOH D:2097 , HOH D:2098
BINDING SITE FOR RESIDUE ADP D1476
13
BC4
SOFTWARE
THR D:163 , ADP D:1476 , HOH D:2039 , HOH D:2049 , HOH D:2095 , HOH D:2098
BINDING SITE FOR RESIDUE MG D1477
14
BC5
SOFTWARE
SER C:344 , ARG C:373 , ALA D:158 , GLY D:159 , LYS D:162 , TYR D:311 , ADP D:1476 , HOH D:2098
BINDING SITE FOR RESIDUE AZI D1478
15
BC6
SOFTWARE
ARG D:231 , GLY D:265 , ARG D:274 , ASP D:288
BINDING SITE FOR RESIDUE GOL D1479
16
BC7
SOFTWARE
ALA E:158 , GLY E:159 , VAL E:160 , GLY E:161 , LYS E:162 , THR E:163
BINDING SITE FOR RESIDUE PO4 E1475
17
BC8
SOFTWARE
ILE B:343 , SER B:344 , VAL B:371 , ARG B:373 , GLY F:157 , ALA F:158 , GLY F:159 , VAL F:160 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , GLU F:188 , ARG F:189 , TYR F:345 , PHE F:418 , ALA F:421 , PHE F:424 , THR F:425 , MG F:1476 , HOH F:2102 , HOH F:2103 , HOH F:2104
BINDING SITE FOR RESIDUE ANP F1475
18
BC9
SOFTWARE
THR F:163 , GLU F:188 , ANP F:1475 , HOH F:2032 , HOH F:2102 , HOH F:2103
BINDING SITE FOR RESIDUE MG F1476
19
CC1
SOFTWARE
ARG B:291 , GLU B:292 , HOH B:2056 , ALA F:278 , VAL F:279 , THR G:259 , LYS G:260 , GLU G:264
BINDING SITE FOR RESIDUE PIT G1273
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (G:258-271)
2: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_BOVIN
283-296
1
G:258-271
-
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_BOVIN
396-405
3
D:346-355
E:346-355
F:346-355
-
-
-
ATPA_BOVIN
406-415
3
A:363-372
B:363-372
C:363-372
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(7, 38)
Info
All SCOP Domains
1a: SCOP_d2jj1a3 (A:380-510)
1b: SCOP_d2jj1b3 (B:380-509)
1c: SCOP_d2jj1c3 (C:380-510)
1d: SCOP_d2jj1h3 (H:380-510)
1e: SCOP_d2jj1i3 (I:380-509)
1f: SCOP_d2jj1j3 (J:380-510)
2a: SCOP_d2jj1d3 (D:358-475)
2b: SCOP_d2jj1e3 (E:358-474)
2c: SCOP_d2jj1f3 (F:358-474)
2d: SCOP_d2jj1k3 (K:358-475)
2e: SCOP_d2jj1l3 (L:358-474)
2f: SCOP_d2jj1m3 (M:358-474)
3a: SCOP_d2jj1a1 (A:24-94)
3b: SCOP_d2jj1b1 (B:23-94)
3c: SCOP_d2jj1c1 (C:16-94)
3d: SCOP_d2jj1h1 (H:24-94)
3e: SCOP_d2jj1i1 (I:23-94)
3f: SCOP_d2jj1j1 (J:16-94)
4a: SCOP_d2jj1d1 (D:9-81)
4b: SCOP_d2jj1e1 (E:9-81)
4c: SCOP_d2jj1f1 (F:9-81)
4d: SCOP_d2jj1k1 (K:9-81)
4e: SCOP_d2jj1l1 (L:9-81)
4f: SCOP_d2jj1m1 (M:9-81)
5a: SCOP_d2jj1a2 (A:95-379)
5b: SCOP_d2jj1b2 (B:95-379)
5c: SCOP_d2jj1c2 (C:95-379)
5d: SCOP_d2jj1h2 (H:95-379)
5e: SCOP_d2jj1i2 (I:95-379)
5f: SCOP_d2jj1j2 (J:95-379)
6a: SCOP_d2jj1d2 (D:82-357)
6b: SCOP_d2jj1e2 (E:82-357)
6c: SCOP_d2jj1f2 (F:82-357)
6d: SCOP_d2jj1k2 (K:82-357)
6e: SCOP_d2jj1l2 (L:82-357)
6f: SCOP_d2jj1m2 (M:82-357)
7a: SCOP_d2jj1g_ (G:)
7b: SCOP_d2jj1n_ (N:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Left-handed superhelix
(73)
Superfamily
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(5)
1a
d2jj1a3
A:380-510
1b
d2jj1b3
B:380-509
1c
d2jj1c3
C:380-510
1d
d2jj1h3
H:380-510
1e
d2jj1i3
I:380-509
1f
d2jj1j3
J:380-510
Family
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase beta subunit, domain 3
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
2a
d2jj1d3
D:358-475
2b
d2jj1e3
E:358-474
2c
d2jj1f3
F:358-474
2d
d2jj1k3
K:358-475
2e
d2jj1l3
L:358-474
2f
d2jj1m3
M:358-474
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(5)
3a
d2jj1a1
A:24-94
3b
d2jj1b1
B:23-94
3c
d2jj1c1
C:16-94
3d
d2jj1h1
H:24-94
3e
d2jj1i1
I:23-94
3f
d2jj1j1
J:16-94
Family
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase beta subunit, domain 1
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
4a
d2jj1d1
D:9-81
4b
d2jj1e1
E:9-81
4c
d2jj1f1
F:9-81
4d
d2jj1k1
K:9-81
4e
d2jj1l1
L:9-81
4f
d2jj1m1
M:9-81
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
automated matches
(32)
Cow (Bos taurus) [TaxId: 9913]
(5)
5a
d2jj1a2
A:95-379
5b
d2jj1b2
B:95-379
5c
d2jj1c2
C:95-379
5d
d2jj1h2
H:95-379
5e
d2jj1i2
I:95-379
5f
d2jj1j2
J:95-379
Protein domain
:
Central domain of beta subunit of F1 ATP synthase
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
6a
d2jj1d2
D:82-357
6b
d2jj1e2
E:82-357
6c
d2jj1f2
F:82-357
6d
d2jj1k2
K:82-357
6e
d2jj1l2
L:82-357
6f
d2jj1m2
M:82-357
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
ATP synthase (F1-ATPase), gamma subunit
(29)
Family
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Protein domain
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Cow (Bos taurus) [TaxId: 9913]
(19)
7a
d2jj1g_
G:
7b
d2jj1n_
N:
[
close SCOP info
]
CATH Domains
(7, 40)
Info
all CATH domains
1a: CATH_2jj1G02 (G:26-231)
1b: CATH_2jj1N02 (N:26-231)
2a: CATH_2jj1D02 (D:82-357)
2b: CATH_2jj1I02 (I:94-379)
2c: CATH_2jj1J02 (J:94-379)
2d: CATH_2jj1E02 (E:82-357)
2e: CATH_2jj1F02 (F:82-357)
2f: CATH_2jj1K02 (K:82-357)
2g: CATH_2jj1L02 (L:82-357)
2h: CATH_2jj1M02 (M:82-357)
2i: CATH_2jj1A02 (A:94-379)
2j: CATH_2jj1B02 (B:94-379)
2k: CATH_2jj1C02 (C:94-379)
2l: CATH_2jj1H02 (H:94-379)
3a: CATH_2jj1E03 (E:358-474)
3b: CATH_2jj1F03 (F:358-474)
3c: CATH_2jj1L03 (L:358-474)
3d: CATH_2jj1M03 (M:358-474)
3e: CATH_2jj1D03 (D:358-475)
3f: CATH_2jj1K03 (K:358-475)
4a: CATH_2jj1G01 (G:1-25,G:232-267)
4b: CATH_2jj1N01 (N:1-25,N:232-267)
5a: CATH_2jj1A03 (A:380-510)
5b: CATH_2jj1C03 (C:380-510)
5c: CATH_2jj1H03 (H:380-510)
5d: CATH_2jj1J03 (J:380-510)
5e: CATH_2jj1B03 (B:380-509)
5f: CATH_2jj1I03 (I:380-509)
6a: CATH_2jj1A01 (A:24-93)
6b: CATH_2jj1B01 (B:24-93)
6c: CATH_2jj1C01 (C:24-93)
6d: CATH_2jj1H01 (H:24-93)
6e: CATH_2jj1I01 (I:24-93)
6f: CATH_2jj1J01 (J:24-93)
7a: CATH_2jj1D01 (D:9-81)
7b: CATH_2jj1E01 (E:9-81)
7c: CATH_2jj1F01 (F:9-81)
7d: CATH_2jj1K01 (K:9-81)
7e: CATH_2jj1L01 (L:9-81)
7f: CATH_2jj1M01 (M:9-81)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pyruvate Kinase; Chain: A, domain 1
(36)
Homologous Superfamily
:
[code=3.40.1380.10, no name defined]
(14)
Bovine (Bos taurus)
(12)
1a
2jj1G02
G:26-231
1b
2jj1N02
N:26-231
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bovine (Bos taurus)
(17)
2a
2jj1D02
D:82-357
2b
2jj1I02
I:94-379
2c
2jj1J02
J:94-379
2d
2jj1E02
E:82-357
2e
2jj1F02
F:82-357
2f
2jj1K02
K:82-357
2g
2jj1L02
L:82-357
2h
2jj1M02
M:82-357
2i
2jj1A02
A:94-379
2j
2jj1B02
B:94-379
2k
2jj1C02
C:94-379
2l
2jj1H02
H:94-379
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
(32)
Homologous Superfamily
:
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
(32)
Bovine (Bos taurus)
(17)
3a
2jj1E03
E:358-474
3b
2jj1F03
F:358-474
3c
2jj1L03
L:358-474
3d
2jj1M03
M:358-474
3e
2jj1D03
D:358-475
3f
2jj1K03
K:358-475
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.80, no name defined]
(43)
Bovine (Bos taurus)
(13)
4a
2jj1G01
G:1-25,G:232-267
4b
2jj1N01
N:1-25,N:232-267
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lysin
(39)
Homologous Superfamily
:
[code=1.20.150.20, no name defined]
(33)
Bovine (Bos taurus)
(17)
5a
2jj1A03
A:380-510
5b
2jj1C03
C:380-510
5c
2jj1H03
H:380-510
5d
2jj1J03
J:380-510
5e
2jj1B03
B:380-509
5f
2jj1I03
I:380-509
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Bovine (Bos taurus)
(17)
6a
2jj1A01
A:24-93
6b
2jj1B01
B:24-93
6c
2jj1C01
C:24-93
6d
2jj1H01
H:24-93
6e
2jj1I01
I:24-93
6f
2jj1J01
J:24-93
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Bovine (Bos taurus)
(17)
7a
2jj1D01
D:9-81
7b
2jj1E01
E:9-81
7c
2jj1F01
F:9-81
7d
2jj1K01
K:9-81
7e
2jj1L01
L:9-81
7f
2jj1M01
M:9-81
[
close CATH info
]
Pfam Domains
(4, 38)
Info
all PFAM domains
1a: PFAM_ATP_synt_ab_N_2jj1J01 (J:24-92)
1b: PFAM_ATP_synt_ab_N_2jj1J02 (J:24-92)
1c: PFAM_ATP_synt_ab_N_2jj1J03 (J:24-92)
1d: PFAM_ATP_synt_ab_N_2jj1J04 (J:24-92)
1e: PFAM_ATP_synt_ab_N_2jj1J05 (J:24-92)
1f: PFAM_ATP_synt_ab_N_2jj1J06 (J:24-92)
1g: PFAM_ATP_synt_ab_N_2jj1M01 (M:13-79)
1h: PFAM_ATP_synt_ab_N_2jj1M02 (M:13-79)
1i: PFAM_ATP_synt_ab_N_2jj1M03 (M:13-79)
1j: PFAM_ATP_synt_ab_N_2jj1M04 (M:13-79)
1k: PFAM_ATP_synt_ab_N_2jj1M05 (M:13-79)
1l: PFAM_ATP_synt_ab_N_2jj1M06 (M:13-79)
2a: PFAM_ATP_synt_ab_2jj1J07 (J:148-372)
2b: PFAM_ATP_synt_ab_2jj1J08 (J:148-372)
2c: PFAM_ATP_synt_ab_2jj1J09 (J:148-372)
2d: PFAM_ATP_synt_ab_2jj1J10 (J:148-372)
2e: PFAM_ATP_synt_ab_2jj1J11 (J:148-372)
2f: PFAM_ATP_synt_ab_2jj1J12 (J:148-372)
2g: PFAM_ATP_synt_ab_2jj1M07 (M:135-355)
2h: PFAM_ATP_synt_ab_2jj1M08 (M:135-355)
2i: PFAM_ATP_synt_ab_2jj1M09 (M:135-355)
2j: PFAM_ATP_synt_ab_2jj1M10 (M:135-355)
2k: PFAM_ATP_synt_ab_2jj1M11 (M:135-355)
2l: PFAM_ATP_synt_ab_2jj1M12 (M:135-355)
3a: PFAM_ATP_synt_2jj1N01 (N:1-272)
3b: PFAM_ATP_synt_2jj1N02 (N:1-272)
4a: PFAM_ATP_synt_ab_C_2jj1J13 (J:384-488)
4b: PFAM_ATP_synt_ab_C_2jj1J14 (J:384-488)
4c: PFAM_ATP_synt_ab_C_2jj1J15 (J:384-488)
4d: PFAM_ATP_synt_ab_C_2jj1J16 (J:384-488)
4e: PFAM_ATP_synt_ab_C_2jj1J17 (J:384-488)
4f: PFAM_ATP_synt_ab_C_2jj1J18 (J:384-488)
4g: PFAM_ATP_synt_ab_C_2jj1M13 (M:368-474)
4h: PFAM_ATP_synt_ab_C_2jj1M14 (M:368-474)
4i: PFAM_ATP_synt_ab_C_2jj1M15 (M:368-474)
4j: PFAM_ATP_synt_ab_C_2jj1M16 (M:368-474)
4k: PFAM_ATP_synt_ab_C_2jj1M17 (M:368-474)
4l: PFAM_ATP_synt_ab_C_2jj1M18 (M:368-474)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HAS-barrel
(27)
Family
:
ATP-synt_ab_N
(27)
Bos taurus (Bovine)
(14)
1a
ATP-synt_ab_N-2jj1J01
J:24-92
1b
ATP-synt_ab_N-2jj1J02
J:24-92
1c
ATP-synt_ab_N-2jj1J03
J:24-92
1d
ATP-synt_ab_N-2jj1J04
J:24-92
1e
ATP-synt_ab_N-2jj1J05
J:24-92
1f
ATP-synt_ab_N-2jj1J06
J:24-92
1g
ATP-synt_ab_N-2jj1M01
M:13-79
1h
ATP-synt_ab_N-2jj1M02
M:13-79
1i
ATP-synt_ab_N-2jj1M03
M:13-79
1j
ATP-synt_ab_N-2jj1M04
M:13-79
1k
ATP-synt_ab_N-2jj1M05
M:13-79
1l
ATP-synt_ab_N-2jj1M06
M:13-79
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Bos taurus (Bovine)
(14)
2a
ATP-synt_ab-2jj1J07
J:148-372
2b
ATP-synt_ab-2jj1J08
J:148-372
2c
ATP-synt_ab-2jj1J09
J:148-372
2d
ATP-synt_ab-2jj1J10
J:148-372
2e
ATP-synt_ab-2jj1J11
J:148-372
2f
ATP-synt_ab-2jj1J12
J:148-372
2g
ATP-synt_ab-2jj1M07
M:135-355
2h
ATP-synt_ab-2jj1M08
M:135-355
2i
ATP-synt_ab-2jj1M09
M:135-355
2j
ATP-synt_ab-2jj1M10
M:135-355
2k
ATP-synt_ab-2jj1M11
M:135-355
2l
ATP-synt_ab-2jj1M12
M:135-355
Clan
:
no clan defined [family: ATP-synt]
(22)
Family
:
ATP-synt
(22)
Bos taurus (Bovine)
(14)
3a
ATP-synt-2jj1N01
N:1-272
3b
ATP-synt-2jj1N02
N:1-272
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Bos taurus (Bovine)
(14)
4a
ATP-synt_ab_C-2jj1J13
J:384-488
4b
ATP-synt_ab_C-2jj1J14
J:384-488
4c
ATP-synt_ab_C-2jj1J15
J:384-488
4d
ATP-synt_ab_C-2jj1J16
J:384-488
4e
ATP-synt_ab_C-2jj1J17
J:384-488
4f
ATP-synt_ab_C-2jj1J18
J:384-488
4g
ATP-synt_ab_C-2jj1M13
M:368-474
4h
ATP-synt_ab_C-2jj1M14
M:368-474
4i
ATP-synt_ab_C-2jj1M15
M:368-474
4j
ATP-synt_ab_C-2jj1M16
M:368-474
4k
ATP-synt_ab_C-2jj1M17
M:368-474
4l
ATP-synt_ab_C-2jj1M18
M:368-474
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (978 KB)
Header - Asym.Unit
Biol.Unit 1 (485 KB)
Header - Biol.Unit 1
Biol.Unit 2 (488 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2JJ1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help