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2JJ1
Asym. Unit
Info
Asym.Unit (978 KB)
Biol.Unit 1 (485 KB)
Biol.Unit 2 (488 KB)
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(1)
Title
:
THE STRUCTURE OF F1-ATPASE INHIBITED BY PICEATANNOL.
Authors
:
J. R. Gledhill, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Date
:
03 Jul 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Biol. Unit 2: H,I,J,K,L,M,N (1x)
Keywords
:
Hydrolase, Mitochondrion, Atp-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Gledhill, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Mechanism Of Inhibition Of Bovine F1-Atpase By Resveratrol And Related Polyphenols.
Proc. Nat. Acad. Sci. Usa V. 104 13632 2007
[
close entry info
]
Hetero Components
(7, 38)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
2d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
2e: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPe)
2f: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPf)
2g: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPg)
2h: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPh)
3a: AZIDE ION (AZIa)
3b: AZIDE ION (AZIb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
5i: MAGNESIUM ION (MGi)
5j: MAGNESIUM ION (MGj)
6a: PICEATANNOL (PITa)
6b: PICEATANNOL (PITb)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ANP
8
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
AZI
2
Ligand/Ion
AZIDE ION
4
GOL
12
Ligand/Ion
GLYCEROL
5
MG
10
Ligand/Ion
MAGNESIUM ION
6
PIT
2
Ligand/Ion
PICEATANNOL
7
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , ARG A:362 , PRO A:363 , GLN A:430 , GLN A:432 , MG A:1512 , HOH A:2033 , HOH A:2065 , HOH A:2066 , HOH A:2100 , HOH A:2101
BINDING SITE FOR RESIDUE ANP A1511
02
AC2
SOFTWARE
THR A:176 , ANP A:1511 , HOH A:2033 , HOH A:2051 , HOH A:2101
BINDING SITE FOR RESIDUE MG A1512
03
AC3
SOFTWARE
GLU A:50 , TYR A:244 , LEU A:245 , TYR A:248 , ARG A:304
BINDING SITE FOR RESIDUE GOL A1513
04
AC4
SOFTWARE
GLY A:290 , ARG A:291 , TYR A:294 , PRO A:295 , GLY A:296 , TYR A:337 , SER E:266 , GLY E:280 , HOH E:2047
BINDING SITE FOR RESIDUE GOL A1514
05
AC5
SOFTWARE
ARG B:171 , GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , PHE B:357 , GLN B:430 , GLN B:432 , MG B:1511 , HOH B:2035 , HOH B:2050 , HOH B:2064 , HOH B:2081 , ASP E:359
BINDING SITE FOR RESIDUE ANP B1510
06
AC6
SOFTWARE
THR B:176 , ANP B:1510 , HOH B:2035 , HOH B:2050 , HOH B:2081
BINDING SITE FOR RESIDUE MG B1511
07
AC7
SOFTWARE
VAL B:129 , GLY B:130 , TYR B:244 , TYR B:248 , ARG B:304
BINDING SITE FOR RESIDUE GOL B1512
08
AC8
SOFTWARE
GLY B:290 , ARG B:291 , TYR B:294 , PRO B:295 , GLY B:296 , TYR B:337 , SER F:266 , VAL F:279 , TYR F:281
BINDING SITE FOR RESIDUE GOL B1513
09
AC9
SOFTWARE
ARG C:171 , GLN C:172 , THR C:173 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , PHE C:357 , ARG C:362 , PRO C:363 , GLN C:430 , GLN C:432 , MG C:1512 , HOH C:2102 , HOH C:2103 , HOH C:2104 , HOH C:2105 , HOH C:2106 , TYR F:368 , HOH F:2076
BINDING SITE FOR RESIDUE ANP C1511
10
BC1
SOFTWARE
THR C:176 , ANP C:1511 , HOH C:2043 , HOH C:2103 , HOH C:2106
BINDING SITE FOR RESIDUE MG C1512
11
BC2
SOFTWARE
MET C:62 , VAL C:129 , GLY C:130 , TYR C:244 , ARG C:304 , HOH C:2107
BINDING SITE FOR RESIDUE GOL C1513
12
BC3
SOFTWARE
SER C:372 , ARG C:373 , GLY D:157 , GLY D:159 , VAL D:160 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , TYR D:345 , PHE D:418 , ALA D:421 , PHE D:424 , MG D:1477 , AZI D:1478 , HOH D:2086 , HOH D:2095 , HOH D:2096 , HOH D:2097 , HOH D:2098
BINDING SITE FOR RESIDUE ADP D1476
13
BC4
SOFTWARE
THR D:163 , ADP D:1476 , HOH D:2039 , HOH D:2049 , HOH D:2095 , HOH D:2098
BINDING SITE FOR RESIDUE MG D1477
14
BC5
SOFTWARE
SER C:344 , ARG C:373 , ALA D:158 , GLY D:159 , LYS D:162 , TYR D:311 , ADP D:1476 , HOH D:2098
BINDING SITE FOR RESIDUE AZI D1478
15
BC6
SOFTWARE
ARG D:231 , GLY D:265 , ARG D:274 , ASP D:288
BINDING SITE FOR RESIDUE GOL D1479
16
BC7
SOFTWARE
ALA E:158 , GLY E:159 , VAL E:160 , GLY E:161 , LYS E:162 , THR E:163
BINDING SITE FOR RESIDUE PO4 E1475
17
BC8
SOFTWARE
ILE B:343 , SER B:344 , VAL B:371 , ARG B:373 , GLY F:157 , ALA F:158 , GLY F:159 , VAL F:160 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , GLU F:188 , ARG F:189 , TYR F:345 , PHE F:418 , ALA F:421 , PHE F:424 , THR F:425 , MG F:1476 , HOH F:2102 , HOH F:2103 , HOH F:2104
BINDING SITE FOR RESIDUE ANP F1475
18
BC9
SOFTWARE
THR F:163 , GLU F:188 , ANP F:1475 , HOH F:2032 , HOH F:2102 , HOH F:2103
BINDING SITE FOR RESIDUE MG F1476
19
CC1
SOFTWARE
ARG B:291 , GLU B:292 , HOH B:2056 , ALA F:278 , VAL F:279 , THR G:259 , LYS G:260 , GLU G:264
BINDING SITE FOR RESIDUE PIT G1273
20
CC2
SOFTWARE
ARG H:171 , GLN H:172 , THR H:173 , GLY H:174 , LYS H:175 , THR H:176 , SER H:177 , PHE H:357 , ARG H:362 , GLN H:430 , GLN H:432 , MG H:1512 , HOH H:2053 , HOH H:2075 , HOH H:2076 , HOH H:2077 , HOH H:2078 , HOH H:2079
BINDING SITE FOR RESIDUE ANP H1511
21
CC3
SOFTWARE
THR H:176 , ANP H:1511 , HOH H:2041 , HOH H:2075 , HOH H:2076
BINDING SITE FOR RESIDUE MG H1512
22
CC4
SOFTWARE
GLU H:50 , GLY H:130 , TYR H:244 , LEU H:245 , TYR H:248 , ARG H:304
BINDING SITE FOR RESIDUE GOL H1513
23
CC5
SOFTWARE
GLY H:290 , ARG H:291 , TYR H:294 , PRO H:295 , GLY H:296 , TYR H:337 , GLN L:263 , SER L:266 , GLY L:280
BINDING SITE FOR RESIDUE GOL H1514
24
CC6
SOFTWARE
ARG I:171 , GLN I:172 , THR I:173 , GLY I:174 , LYS I:175 , THR I:176 , SER I:177 , PHE I:357 , ARG I:362 , GLN I:430 , GLY I:431 , GLN I:432 , MG I:1511 , HOH I:2025 , HOH I:2026 , HOH I:2086 , ARG L:356 , ASP L:359
BINDING SITE FOR RESIDUE ANP I1510
25
CC7
SOFTWARE
THR I:176 , ANP I:1510 , HOH I:2026 , HOH I:2027 , HOH I:2086
BINDING SITE FOR RESIDUE MG I1511
26
CC8
SOFTWARE
VAL I:129 , GLY I:130 , TYR I:244 , TYR I:248 , ARG I:304
BINDING SITE FOR RESIDUE GOL I1512
27
CC9
SOFTWARE
ARG J:171 , GLN J:172 , THR J:173 , GLY J:174 , LYS J:175 , THR J:176 , SER J:177 , PHE J:357 , GLN J:430 , GLY J:431 , GLN J:432 , MG J:1512 , HOH J:2101 , HOH J:2102 , HOH J:2103 , TYR M:368 , HOH M:2089
BINDING SITE FOR RESIDUE ANP J1511
28
DC1
SOFTWARE
THR J:176 , ANP J:1511 , HOH J:2037 , HOH J:2101 , HOH J:2102
BINDING SITE FOR RESIDUE MG J1512
29
DC2
SOFTWARE
MET J:62 , GLY J:130 , TYR J:244 , TYR J:248 , ARG J:304 , HOH J:2104
BINDING SITE FOR RESIDUE GOL J1513
30
DC3
SOFTWARE
SER J:372 , ARG J:373 , GLY K:159 , VAL K:160 , GLY K:161 , LYS K:162 , THR K:163 , VAL K:164 , TYR K:345 , PHE K:418 , ALA K:421 , PHE K:424 , THR K:425 , MG K:1477 , AZI K:1478 , HOH K:2038 , HOH K:2091 , HOH K:2092
BINDING SITE FOR RESIDUE ADP K1476
31
DC4
SOFTWARE
THR K:163 , ADP K:1476 , HOH K:2038 , HOH K:2041 , HOH K:2046 , HOH K:2092
BINDING SITE FOR RESIDUE MG K1477
32
DC5
SOFTWARE
SER J:344 , ARG J:373 , ALA K:158 , GLY K:159 , LYS K:162 , ARG K:189 , TYR K:311 , ADP K:1476 , HOH K:2092 , HOH K:2093
BINDING SITE FOR RESIDUE AZI K1478
33
DC6
SOFTWARE
ARG K:231 , GLY K:265 , ARG K:274 , ASP K:288
BINDING SITE FOR RESIDUE GOL K1479
34
DC7
SOFTWARE
GLN H:215 , SER K:127 , GLU K:129 , GLN K:130 , GLY K:149 , THR K:298 , ASP K:330
BINDING SITE FOR RESIDUE GOL K1480
35
DC8
SOFTWARE
GLY L:157 , GLY L:159 , VAL L:160 , LYS L:162 , THR L:163
BINDING SITE FOR RESIDUE PO4 L1475
36
DC9
SOFTWARE
ILE I:343 , SER I:344 , ARG I:373 , ALA M:158 , GLY M:159 , VAL M:160 , GLY M:161 , LYS M:162 , THR M:163 , VAL M:164 , GLU M:188 , ARG M:189 , TYR M:311 , TYR M:345 , PHE M:418 , ALA M:421 , PHE M:424 , THR M:425 , MG M:1476 , HOH M:2039 , HOH M:2046 , HOH M:2103 , HOH M:2104
BINDING SITE FOR RESIDUE ANP M1475
37
EC1
SOFTWARE
THR M:163 , GLU M:188 , ANP M:1475 , HOH M:2044 , HOH M:2103 , HOH M:2104
BINDING SITE FOR RESIDUE MG M1476
38
EC2
SOFTWARE
ARG I:291 , GLU I:292 , ALA J:293 , ALA M:278 , VAL M:279 , HOH M:2076 , ALA N:256 , THR N:259 , LYS N:260 , ILE N:263 , GLU N:264 , HOH N:2021
BINDING SITE FOR RESIDUE PIT N1273
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (G:258-271,N:258-271)
2: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355,K:34...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_BOVIN
283-296
2
G:258-271
N:258-271
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_BOVIN
396-405
6
D:346-355
E:346-355
F:346-355
K:346-355
L:346-355
M:346-355
ATPA_BOVIN
406-415
6
A:363-372
B:363-372
C:363-372
H:363-372
I:363-372
J:363-372
[
close PROSITE info
]
Exons
(17, 70)
Info
All Exons
Exon 1.2 (D:9-63 | E:9-63 | F:9-63 | K:9-63 ...)
Exon 1.3 (D:63-121 | E:63-121 | F:63-121 | K...)
Exon 1.4 (D:121-162 | E:121-162 | F:121-162 ...)
Exon 1.5 (D:162-223 | E:162-223 | F:162-223 ...)
Exon 1.6 (D:224-276 | E:224-276 | F:224-276 ...)
Exon 1.7 (D:277-317 | E:277-317 | F:277-317 ...)
Exon 1.8 (D:318-388 | E:318-388 | F:318-388 ...)
Exon 1.9 (D:389-456 | E:389-456 | F:389-456 ...)
Exon 1.10 (D:456-475 | E:456-474 | F:456-474 ...)
Exon 2.2 (G:1-6 | N:1-6)
Exon 2.3 (G:6-47 | N:6-47)
Exon 2.4 (G:72-115 (gaps) | N:72-115 (gaps))
Exon 2.5 (G:129-166 (gaps) | N:129-166 (gaps...)
Exon 2.6 (G:166-173 | N:166-173)
Exon 2.7 (G:206-240 | N:206-240)
Exon 2.8 (G:240-272 | N:240-272)
Exon 2.9 (G:272-272 | N:272-272)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/-
11: Boundary 2.1/2.2
12: Boundary 2.2/2.3
13: Boundary 2.3/2.4
14: Boundary 2.4/2.5
15: Boundary 2.5/2.6
16: Boundary 2.6/2.7
17: Boundary 2.7/2.8
18: Boundary 2.8/2.9
19: Boundary 2.9/2.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000017710
1
ENSBTAE00000144098
chr5:
61355655-61355808
154
ATPB_BOVIN
1-52
52
0
-
-
1.2
ENSBTAT00000017710
2
ENSBTAE00000144099
chr5:
61356274-61356456
183
ATPB_BOVIN
52-113
62
6
D:9-63
E:9-63
F:9-63
K:9-63
L:9-63
M:9-63
55
55
55
55
55
55
1.3
ENSBTAT00000017710
3
ENSBTAE00000144101
chr5:
61356699-61356873
175
ATPB_BOVIN
113-171
59
6
D:63-121
E:63-121
F:63-121
K:63-121
L:63-121
M:63-121
59
59
59
59
59
59
1.4
ENSBTAT00000017710
4
ENSBTAE00000144103
chr5:
61357390-61357511
122
ATPB_BOVIN
171-212
42
6
D:121-162
E:121-162
F:121-162
K:121-162
L:121-162
M:121-162
42
42
42
42
42
42
1.5
ENSBTAT00000017710
5
ENSBTAE00000144107
chr5:
61357757-61357941
185
ATPB_BOVIN
212-273
62
6
D:162-223
E:162-223
F:162-223
K:162-223
L:162-223
M:162-223
62
62
62
62
62
62
1.6
ENSBTAT00000017710
6
ENSBTAE00000144109
chr5:
61358444-61358602
159
ATPB_BOVIN
274-326
53
6
D:224-276
E:224-276
F:224-276
K:224-276
L:224-276
M:224-276
53
53
53
53
53
53
1.7
ENSBTAT00000017710
7
ENSBTAE00000144110
chr5:
61358693-61358815
123
ATPB_BOVIN
327-367
41
6
D:277-317
E:277-317
F:277-317
K:277-317
L:277-317
M:277-317
41
41
41
41
41
41
1.8
ENSBTAT00000017710
8
ENSBTAE00000144111
chr5:
61359431-61359643
213
ATPB_BOVIN
368-438
71
6
D:318-388
E:318-388
F:318-388
K:318-388
L:318-388
M:318-388
71
71
71
71
71
71
1.9
ENSBTAT00000017710
9
ENSBTAE00000144114
chr5:
61360024-61360225
202
ATPB_BOVIN
439-506
68
6
D:389-456
E:389-456
F:389-456
K:389-456
L:389-456
M:389-456
68
68
68
68
68
68
1.10
ENSBTAT00000017710
10
ENSBTAE00000297207
chr5:
61360774-61361036
263
ATPB_BOVIN
506-537
32
6
D:456-475
E:456-474
F:456-474
K:456-475
L:456-474
M:456-474
20
19
19
20
19
19
2.1
ENSBTAT00000018505
1
ENSBTAE00000150694
chr13:
14893326-14893240
87
ATPG_BOVIN
1-19
19
0
-
-
2.2
ENSBTAT00000018505
2
ENSBTAE00000150697
chr13:
14886562-14886528
35
ATPG_BOVIN
19-31
13
2
G:1-6
N:1-6
6
6
2.3
ENSBTAT00000018505
3
ENSBTAE00000150700
chr13:
14886029-14885898
132
ATPG_BOVIN
31-75
45
2
G:6-47
N:6-47
42
42
2.4
ENSBTAT00000018505
4
ENSBTAE00000150704
chr13:
14882864-14882660
205
ATPG_BOVIN
75-143
69
2
G:72-115 (gaps)
N:72-115 (gaps)
44
44
2.5
ENSBTAT00000018505
5
ENSBTAE00000150705
chr13:
14882083-14881940
144
ATPG_BOVIN
143-191
49
2
G:129-166 (gaps)
N:129-166 (gaps)
38
38
2.6
ENSBTAT00000018505
6
ENSBTAE00000150706
chr13:
14881819-14881755
65
ATPG_BOVIN
191-213
23
2
G:166-173
N:166-173
8
8
2.7
ENSBTAT00000018505
7
ENSBTAE00000150707
chr13:
14880753-14880598
156
ATPG_BOVIN
213-265
53
2
G:206-240
N:206-240
35
35
2.8
ENSBTAT00000018505
8
ENSBTAE00000150708
chr13:
14880202-14880106
97
ATPG_BOVIN
265-297
33
2
G:240-272
N:240-272
33
33
2.9
ENSBTAT00000018505
9
ENSBTAE00000305670
chr13:
14877783-14877747
37
ATPG_BOVIN
297-298
2
2
G:272-272
N:272-272
1
1
2.10
ENSBTAT00000018505
10
ENSBTAE00000305668
chr13:
14877118-14876979
140
ATPG_BOVIN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(7, 38)
Info
All SCOP Domains
1a: SCOP_d2jj1a3 (A:380-510)
1b: SCOP_d2jj1b3 (B:380-509)
1c: SCOP_d2jj1c3 (C:380-510)
1d: SCOP_d2jj1h3 (H:380-510)
1e: SCOP_d2jj1i3 (I:380-509)
1f: SCOP_d2jj1j3 (J:380-510)
2a: SCOP_d2jj1d3 (D:358-475)
2b: SCOP_d2jj1e3 (E:358-474)
2c: SCOP_d2jj1f3 (F:358-474)
2d: SCOP_d2jj1k3 (K:358-475)
2e: SCOP_d2jj1l3 (L:358-474)
2f: SCOP_d2jj1m3 (M:358-474)
3a: SCOP_d2jj1a1 (A:24-94)
3b: SCOP_d2jj1b1 (B:23-94)
3c: SCOP_d2jj1c1 (C:16-94)
3d: SCOP_d2jj1h1 (H:24-94)
3e: SCOP_d2jj1i1 (I:23-94)
3f: SCOP_d2jj1j1 (J:16-94)
4a: SCOP_d2jj1d1 (D:9-81)
4b: SCOP_d2jj1e1 (E:9-81)
4c: SCOP_d2jj1f1 (F:9-81)
4d: SCOP_d2jj1k1 (K:9-81)
4e: SCOP_d2jj1l1 (L:9-81)
4f: SCOP_d2jj1m1 (M:9-81)
5a: SCOP_d2jj1a2 (A:95-379)
5b: SCOP_d2jj1b2 (B:95-379)
5c: SCOP_d2jj1c2 (C:95-379)
5d: SCOP_d2jj1h2 (H:95-379)
5e: SCOP_d2jj1i2 (I:95-379)
5f: SCOP_d2jj1j2 (J:95-379)
6a: SCOP_d2jj1d2 (D:82-357)
6b: SCOP_d2jj1e2 (E:82-357)
6c: SCOP_d2jj1f2 (F:82-357)
6d: SCOP_d2jj1k2 (K:82-357)
6e: SCOP_d2jj1l2 (L:82-357)
6f: SCOP_d2jj1m2 (M:82-357)
7a: SCOP_d2jj1g_ (G:)
7b: SCOP_d2jj1n_ (N:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Left-handed superhelix
(73)
Superfamily
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(5)
1a
d2jj1a3
A:380-510
1b
d2jj1b3
B:380-509
1c
d2jj1c3
C:380-510
1d
d2jj1h3
H:380-510
1e
d2jj1i3
I:380-509
1f
d2jj1j3
J:380-510
Family
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase beta subunit, domain 3
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
2a
d2jj1d3
D:358-475
2b
d2jj1e3
E:358-474
2c
d2jj1f3
F:358-474
2d
d2jj1k3
K:358-475
2e
d2jj1l3
L:358-474
2f
d2jj1m3
M:358-474
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(5)
3a
d2jj1a1
A:24-94
3b
d2jj1b1
B:23-94
3c
d2jj1c1
C:16-94
3d
d2jj1h1
H:24-94
3e
d2jj1i1
I:23-94
3f
d2jj1j1
J:16-94
Family
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase beta subunit, domain 1
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
4a
d2jj1d1
D:9-81
4b
d2jj1e1
E:9-81
4c
d2jj1f1
F:9-81
4d
d2jj1k1
K:9-81
4e
d2jj1l1
L:9-81
4f
d2jj1m1
M:9-81
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
automated matches
(32)
Cow (Bos taurus) [TaxId: 9913]
(5)
5a
d2jj1a2
A:95-379
5b
d2jj1b2
B:95-379
5c
d2jj1c2
C:95-379
5d
d2jj1h2
H:95-379
5e
d2jj1i2
I:95-379
5f
d2jj1j2
J:95-379
Protein domain
:
Central domain of beta subunit of F1 ATP synthase
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
6a
d2jj1d2
D:82-357
6b
d2jj1e2
E:82-357
6c
d2jj1f2
F:82-357
6d
d2jj1k2
K:82-357
6e
d2jj1l2
L:82-357
6f
d2jj1m2
M:82-357
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
ATP synthase (F1-ATPase), gamma subunit
(29)
Family
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Protein domain
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Cow (Bos taurus) [TaxId: 9913]
(19)
7a
d2jj1g_
G:
7b
d2jj1n_
N:
[
close SCOP info
]
CATH Domains
(7, 40)
Info
all CATH domains
1a: CATH_2jj1G02 (G:26-231)
1b: CATH_2jj1N02 (N:26-231)
2a: CATH_2jj1D02 (D:82-357)
2b: CATH_2jj1I02 (I:94-379)
2c: CATH_2jj1J02 (J:94-379)
2d: CATH_2jj1E02 (E:82-357)
2e: CATH_2jj1F02 (F:82-357)
2f: CATH_2jj1K02 (K:82-357)
2g: CATH_2jj1L02 (L:82-357)
2h: CATH_2jj1M02 (M:82-357)
2i: CATH_2jj1A02 (A:94-379)
2j: CATH_2jj1B02 (B:94-379)
2k: CATH_2jj1C02 (C:94-379)
2l: CATH_2jj1H02 (H:94-379)
3a: CATH_2jj1E03 (E:358-474)
3b: CATH_2jj1F03 (F:358-474)
3c: CATH_2jj1L03 (L:358-474)
3d: CATH_2jj1M03 (M:358-474)
3e: CATH_2jj1D03 (D:358-475)
3f: CATH_2jj1K03 (K:358-475)
4a: CATH_2jj1G01 (G:1-25,G:232-267)
4b: CATH_2jj1N01 (N:1-25,N:232-267)
5a: CATH_2jj1A03 (A:380-510)
5b: CATH_2jj1C03 (C:380-510)
5c: CATH_2jj1H03 (H:380-510)
5d: CATH_2jj1J03 (J:380-510)
5e: CATH_2jj1B03 (B:380-509)
5f: CATH_2jj1I03 (I:380-509)
6a: CATH_2jj1A01 (A:24-93)
6b: CATH_2jj1B01 (B:24-93)
6c: CATH_2jj1C01 (C:24-93)
6d: CATH_2jj1H01 (H:24-93)
6e: CATH_2jj1I01 (I:24-93)
6f: CATH_2jj1J01 (J:24-93)
7a: CATH_2jj1D01 (D:9-81)
7b: CATH_2jj1E01 (E:9-81)
7c: CATH_2jj1F01 (F:9-81)
7d: CATH_2jj1K01 (K:9-81)
7e: CATH_2jj1L01 (L:9-81)
7f: CATH_2jj1M01 (M:9-81)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pyruvate Kinase; Chain: A, domain 1
(36)
Homologous Superfamily
:
[code=3.40.1380.10, no name defined]
(14)
Bovine (Bos taurus)
(12)
1a
2jj1G02
G:26-231
1b
2jj1N02
N:26-231
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bovine (Bos taurus)
(17)
2a
2jj1D02
D:82-357
2b
2jj1I02
I:94-379
2c
2jj1J02
J:94-379
2d
2jj1E02
E:82-357
2e
2jj1F02
F:82-357
2f
2jj1K02
K:82-357
2g
2jj1L02
L:82-357
2h
2jj1M02
M:82-357
2i
2jj1A02
A:94-379
2j
2jj1B02
B:94-379
2k
2jj1C02
C:94-379
2l
2jj1H02
H:94-379
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
(32)
Homologous Superfamily
:
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
(32)
Bovine (Bos taurus)
(17)
3a
2jj1E03
E:358-474
3b
2jj1F03
F:358-474
3c
2jj1L03
L:358-474
3d
2jj1M03
M:358-474
3e
2jj1D03
D:358-475
3f
2jj1K03
K:358-475
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.80, no name defined]
(43)
Bovine (Bos taurus)
(13)
4a
2jj1G01
G:1-25,G:232-267
4b
2jj1N01
N:1-25,N:232-267
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lysin
(39)
Homologous Superfamily
:
[code=1.20.150.20, no name defined]
(33)
Bovine (Bos taurus)
(17)
5a
2jj1A03
A:380-510
5b
2jj1C03
C:380-510
5c
2jj1H03
H:380-510
5d
2jj1J03
J:380-510
5e
2jj1B03
B:380-509
5f
2jj1I03
I:380-509
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Bovine (Bos taurus)
(17)
6a
2jj1A01
A:24-93
6b
2jj1B01
B:24-93
6c
2jj1C01
C:24-93
6d
2jj1H01
H:24-93
6e
2jj1I01
I:24-93
6f
2jj1J01
J:24-93
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Bovine (Bos taurus)
(17)
7a
2jj1D01
D:9-81
7b
2jj1E01
E:9-81
7c
2jj1F01
F:9-81
7d
2jj1K01
K:9-81
7e
2jj1L01
L:9-81
7f
2jj1M01
M:9-81
[
close CATH info
]
Pfam Domains
(4, 38)
Info
all PFAM domains
1a: PFAM_ATP_synt_ab_N_2jj1J01 (J:24-92)
1b: PFAM_ATP_synt_ab_N_2jj1J02 (J:24-92)
1c: PFAM_ATP_synt_ab_N_2jj1J03 (J:24-92)
1d: PFAM_ATP_synt_ab_N_2jj1J04 (J:24-92)
1e: PFAM_ATP_synt_ab_N_2jj1J05 (J:24-92)
1f: PFAM_ATP_synt_ab_N_2jj1J06 (J:24-92)
1g: PFAM_ATP_synt_ab_N_2jj1M01 (M:13-79)
1h: PFAM_ATP_synt_ab_N_2jj1M02 (M:13-79)
1i: PFAM_ATP_synt_ab_N_2jj1M03 (M:13-79)
1j: PFAM_ATP_synt_ab_N_2jj1M04 (M:13-79)
1k: PFAM_ATP_synt_ab_N_2jj1M05 (M:13-79)
1l: PFAM_ATP_synt_ab_N_2jj1M06 (M:13-79)
2a: PFAM_ATP_synt_ab_2jj1J07 (J:148-372)
2b: PFAM_ATP_synt_ab_2jj1J08 (J:148-372)
2c: PFAM_ATP_synt_ab_2jj1J09 (J:148-372)
2d: PFAM_ATP_synt_ab_2jj1J10 (J:148-372)
2e: PFAM_ATP_synt_ab_2jj1J11 (J:148-372)
2f: PFAM_ATP_synt_ab_2jj1J12 (J:148-372)
2g: PFAM_ATP_synt_ab_2jj1M07 (M:135-355)
2h: PFAM_ATP_synt_ab_2jj1M08 (M:135-355)
2i: PFAM_ATP_synt_ab_2jj1M09 (M:135-355)
2j: PFAM_ATP_synt_ab_2jj1M10 (M:135-355)
2k: PFAM_ATP_synt_ab_2jj1M11 (M:135-355)
2l: PFAM_ATP_synt_ab_2jj1M12 (M:135-355)
3a: PFAM_ATP_synt_2jj1N01 (N:1-272)
3b: PFAM_ATP_synt_2jj1N02 (N:1-272)
4a: PFAM_ATP_synt_ab_C_2jj1J13 (J:384-488)
4b: PFAM_ATP_synt_ab_C_2jj1J14 (J:384-488)
4c: PFAM_ATP_synt_ab_C_2jj1J15 (J:384-488)
4d: PFAM_ATP_synt_ab_C_2jj1J16 (J:384-488)
4e: PFAM_ATP_synt_ab_C_2jj1J17 (J:384-488)
4f: PFAM_ATP_synt_ab_C_2jj1J18 (J:384-488)
4g: PFAM_ATP_synt_ab_C_2jj1M13 (M:368-474)
4h: PFAM_ATP_synt_ab_C_2jj1M14 (M:368-474)
4i: PFAM_ATP_synt_ab_C_2jj1M15 (M:368-474)
4j: PFAM_ATP_synt_ab_C_2jj1M16 (M:368-474)
4k: PFAM_ATP_synt_ab_C_2jj1M17 (M:368-474)
4l: PFAM_ATP_synt_ab_C_2jj1M18 (M:368-474)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HAS-barrel
(27)
Family
:
ATP-synt_ab_N
(27)
Bos taurus (Bovine)
(14)
1a
ATP-synt_ab_N-2jj1J01
J:24-92
1b
ATP-synt_ab_N-2jj1J02
J:24-92
1c
ATP-synt_ab_N-2jj1J03
J:24-92
1d
ATP-synt_ab_N-2jj1J04
J:24-92
1e
ATP-synt_ab_N-2jj1J05
J:24-92
1f
ATP-synt_ab_N-2jj1J06
J:24-92
1g
ATP-synt_ab_N-2jj1M01
M:13-79
1h
ATP-synt_ab_N-2jj1M02
M:13-79
1i
ATP-synt_ab_N-2jj1M03
M:13-79
1j
ATP-synt_ab_N-2jj1M04
M:13-79
1k
ATP-synt_ab_N-2jj1M05
M:13-79
1l
ATP-synt_ab_N-2jj1M06
M:13-79
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Bos taurus (Bovine)
(14)
2a
ATP-synt_ab-2jj1J07
J:148-372
2b
ATP-synt_ab-2jj1J08
J:148-372
2c
ATP-synt_ab-2jj1J09
J:148-372
2d
ATP-synt_ab-2jj1J10
J:148-372
2e
ATP-synt_ab-2jj1J11
J:148-372
2f
ATP-synt_ab-2jj1J12
J:148-372
2g
ATP-synt_ab-2jj1M07
M:135-355
2h
ATP-synt_ab-2jj1M08
M:135-355
2i
ATP-synt_ab-2jj1M09
M:135-355
2j
ATP-synt_ab-2jj1M10
M:135-355
2k
ATP-synt_ab-2jj1M11
M:135-355
2l
ATP-synt_ab-2jj1M12
M:135-355
Clan
:
no clan defined [family: ATP-synt]
(22)
Family
:
ATP-synt
(22)
Bos taurus (Bovine)
(14)
3a
ATP-synt-2jj1N01
N:1-272
3b
ATP-synt-2jj1N02
N:1-272
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Bos taurus (Bovine)
(14)
4a
ATP-synt_ab_C-2jj1J13
J:384-488
4b
ATP-synt_ab_C-2jj1J14
J:384-488
4c
ATP-synt_ab_C-2jj1J15
J:384-488
4d
ATP-synt_ab_C-2jj1J16
J:384-488
4e
ATP-synt_ab_C-2jj1J17
J:384-488
4f
ATP-synt_ab_C-2jj1J18
J:384-488
4g
ATP-synt_ab_C-2jj1M13
M:368-474
4h
ATP-synt_ab_C-2jj1M14
M:368-474
4i
ATP-synt_ab_C-2jj1M15
M:368-474
4j
ATP-synt_ab_C-2jj1M16
M:368-474
4k
ATP-synt_ab_C-2jj1M17
M:368-474
4l
ATP-synt_ab_C-2jj1M18
M:368-474
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