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2JIN
Asym. Unit
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Asym.Unit (25 KB)
Biol.Unit 1 (21 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PDZ DOMAIN OF SYNAPTOJANIN-2 BINDING PROTEIN
Authors
:
J. Tickle, C. Phillips, A. C. W. Pike, C. Cooper, E. Salah, J. Elkins, A. P. Turnbull, A. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom
Date
:
28 Jun 07 (Deposition) - 10 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transmembrane, Outer Membrane, Mitochondria Distribution, Pdz, Membrane, Scaffold, Mitochondrion, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Tickle, C. Phillips, A. C. W. Pike, C. Cooper, E. Salah, J. Elkins, A. P. Turnbull, A. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom D. Doyle
Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein
To Be Published
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: SODIUM ION (NAa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
1
Ligand/Ion
SODIUM ION
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:24 , LYS A:48 , GLY A:51 , ALA A:52 , ALA A:53 , ALA A:54
BINDING SITE FOR RESIDUE NA A1103
2
AC2
SOFTWARE
ARG A:46 , LYS A:48 , GLU A:49 , HOH A:2055 , HOH A:2119
BINDING SITE FOR RESIDUE SO4 A1104
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051394 (V9I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051394
V
9
I
SYJ2B_HUMAN
Polymorphism
4356408
A
V
9
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:13-99)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
SYJ2B_HUMAN
13-100
1
A:13-99
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:-1-22)
Exon 1.2 (A:22-67)
Exon 1.3 (A:68-99)
Exon 1.4 (A:100-103 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000256366
1
ENSE00000807865
chr14:
70883807-70883617
191
SYJ2B_HUMAN
1-22
22
1
A:-1-22
21
1.2
ENST00000256366
2
ENSE00000658851
chr14:
70855323-70855187
137
SYJ2B_HUMAN
22-67
46
1
A:22-67
46
1.3
ENST00000256366
3
ENSE00000658850
chr14:
70842488-70842393
96
SYJ2B_HUMAN
68-99
32
1
A:68-99
32
1.4
ENST00000256366
4
ENSE00000807864
chr14:
70839848-70833217
6632
SYJ2B_HUMAN
100-145
46
1
A:100-103 (gaps)
7
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jina_ (A:)
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)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2jina_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2jinA00 (A:-1-103)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2jinA00
A:-1-103
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_2jinA01 (A:13-97)
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Clans
(
)
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)
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)
(
)
Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2jinA01
A:13-97
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Chain A
Asymmetric Unit 1
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