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2JI4
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (284 KB)
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(1)
Title
:
HUMAN PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE - ASSOCIATED PROTEIN 41 (PAP41)
Authors
:
M. Moche, L. Lehtio, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, T. Karlberg, T. Kotenyova, T. Nyman, D. Ogg, C. Persson, J. Sagemark, P. Stenmark, M. Sundstrom, A. G. Thorsell, S. Van Den Berg, J. Weigelt, P. Nordlund
Date
:
26 Feb 07 (Deposition) - 06 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Phosphorylation, Nucleotide Biosynthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Moche, L. Lehtio, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, T. Karlberg, T. Kotenyova, T. Nyman, D. Ogg, C. Persson, J. Sagemark, P. Stenmark, M. Sundstrom, A. G. Thorsell, S. Van Den Berg, J. Weigelt, P. Nordlund
Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (Pap41)
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:146 , ALA A:165 , SER A:166
BINDING SITE FOR RESIDUE CL A1369
2
AC2
SOFTWARE
GLN A:116 , HIS A:148 , GLN A:149
BINDING SITE FOR RESIDUE CL A1370
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(10, 10)
Info
All Exons
Exon 1.9 (A:19-40)
Exon 1.10b (A:40-58)
Exon 1.11 (A:58-80)
Exon 1.12 (A:80-138 (gaps))
Exon 1.13b (A:138-176)
Exon 1.14 (A:177-195)
Exon 1.15b (A:195-211)
Exon 1.16 (A:253-268)
Exon 1.17b (A:269-317)
Exon 1.19a (A:318-368)
View:
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All Exon Boundaries
01: Boundary 1.8/1.9
02: Boundary 1.9/1.10b
03: Boundary 1.10b/1.11
04: Boundary 1.11/1.12
05: Boundary 1.12/1.13b
06: Boundary 1.13b/1.14
07: Boundary 1.14/1.15b
08: Boundary 1.15b/1.16
09: Boundary 1.16/1.17b
10: Boundary 1.17b/1.19a
11: Boundary 1.19a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5e
ENST00000268835
5e
ENSE00001330251
chr17:
18761492-18761574
83
KPRB_HUMAN
-
0
0
-
-
1.8
ENST00000268835
8
ENSE00001240575
chr17:
18768782-18768877
96
KPRB_HUMAN
-
0
0
-
-
1.9
ENST00000268835
9
ENSE00002196815
chr17:
18769115-18769265
151
KPRB_HUMAN
1-40
40
1
A:19-40
22
1.10b
ENST00000268835
10b
ENSE00001103100
chr17:
18770595-18770647
53
KPRB_HUMAN
40-58
19
1
A:40-58
19
1.11
ENST00000268835
11
ENSE00000946774
chr17:
18775896-18775962
67
KPRB_HUMAN
58-80
23
1
A:58-80
23
1.12
ENST00000268835
12
ENSE00000946775
chr17:
18781011-18781183
173
KPRB_HUMAN
80-138
59
1
A:80-138 (gaps)
59
1.13b
ENST00000268835
13b
ENSE00002170587
chr17:
18785881-18785996
116
KPRB_HUMAN
138-176
39
1
A:138-176
39
1.14
ENST00000268835
14
ENSE00002158948
chr17:
18793135-18793190
56
KPRB_HUMAN
177-195
19
1
A:177-195
19
1.15b
ENST00000268835
15b
ENSE00002186709
chr17:
18814416-18814564
149
KPRB_HUMAN
195-245
51
1
A:195-211
17
1.16
ENST00000268835
16
ENSE00002141164
chr17:
18827227-18827297
71
KPRB_HUMAN
245-268
24
1
A:253-268
16
1.17b
ENST00000268835
17b
ENSE00000946780
chr17:
18832124-18832270
147
KPRB_HUMAN
269-317
49
1
A:269-317
49
1.19a
ENST00000268835
19a
ENSE00001186912
chr17:
18833853-18834580
728
KPRB_HUMAN
318-369
52
1
A:318-368
51
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ji4a1 (A:19-178)
1b: SCOP_d2ji4a2 (A:179-368)
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Classes
(
)
(
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Folds
(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2ji4a1
A:19-178
1b
d2ji4a2
A:179-368
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ji4A01 (A:19-164,A:340-360)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Human (Homo sapiens)
(19)
1a
2ji4A01
A:19-164,A:340-360
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pribosyltran_N_2ji4A01 (A:21-138)
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(
)
Clan
:
no clan defined [family: Pribosyltran_N]
(7)
Family
:
Pribosyltran_N
(7)
Homo sapiens (Human)
(1)
1a
Pribosyltran_N-2ji4A01
A:21-138
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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