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2JHN
Biol. Unit 2
Info
Asym.Unit (118 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
3-METHYLADENINE DNA-GLYCOSYLASE FROM ARCHAEOGLOBUS FULGIDUS
Authors
:
I. Leiros, M. P. Nabong, K. Grosvik, J. Ringvoll, G. T. Haugland, L. Uldal, K. Reite, I. K. Olsbu, I. Knaevelsrud, E. Moe, O. A. Andersen, N. K. Birkeland, P. Ruoff, A. Klungland, S. Bjelland
Date
:
22 Feb 07 (Deposition) - 10 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alka, Dna Repair, N1-Methyladenine, N3-Methylcytosine, Hyperthermophiles, Archaeoglobus Fulgidus, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Leiros, M. P. Nabong, K. Grosvik, J. Ringvoll, G. T. Haugland, L. Uldal, K. Reite, I. K. Olsbu, I. Knaevelsrud, E. Moe, O. A. Andersen, N. K. Birkeland, P. Ruoff, A. Klungland, S. Bjelland
Structural Basis For Enzymatic Excision Of N1- Methyladenine And N3-Methylcytosine From Dna
Embo J. V. 26 2206 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
3a: MERCURIBENZOIC ACID (MBOa)
3b: MERCURIBENZOIC ACID (MBOb)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
4d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
HG
-1
Ligand/Ion
MERCURY (II) ION
3
MBO
1
Ligand/Ion
MERCURIBENZOIC ACID
4
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
MET B:1
BINDING SITE FOR RESIDUE HG B1297
02
AC5
SOFTWARE
THR B:213 , PHE B:215 , ILE B:218 , HOH B:2225
BINDING SITE FOR RESIDUE NA B1298
03
AC6
SOFTWARE
LEU B:21 , PRO B:22 , LEU B:24 , THR B:26 , ASP B:28 , HOH B:2032
BINDING SITE FOR RESIDUE NA B1299
04
AC7
SOFTWARE
LYS A:142 , ARG A:146 , CYS A:178 , GLU B:173 , GLU B:177
BINDING SITE FOR RESIDUE MBO A1296
05
AC9
SOFTWARE
GLU A:177 , LYS B:142 , ARG B:146 , CYS B:178 , HOH B:2284
BINDING SITE FOR RESIDUE MBO B1296
06
BC1
SOFTWARE
ILE B:131 , VAL B:135 , GLY B:179 , LEU B:180 , SER B:181 , LYS B:184 , HOH B:2175 , HOH B:2288
BINDING SITE FOR RESIDUE MES B1301
07
BC2
SOFTWARE
GLY B:204 , GLU B:205 , GLU B:206 , GLU B:207 , HOH B:2289
BINDING SITE FOR RESIDUE MES B1302
08
BC3
SOFTWARE
GLU B:190 , GLU B:194 , SER B:214 , PHE B:215 , LYS B:216 , HOH B:2183 , HOH B:2290
BINDING SITE FOR RESIDUE MES B1303
09
BC6
SOFTWARE
LYS B:15 , PHE B:18 , TYR B:79 , LEU B:80 , LEU B:113 , HOH B:2285 , HOH B:2286
BINDING SITE FOR RESIDUE GOL B1300
10
BC7
SOFTWARE
ASN B:234 , VAL B:235 , PHE B:236 , ALA B:266 , GLY B:271 , HOH B:2291
BINDING SITE FOR RESIDUE GOL B1304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HhH_GPD_2jhnB01 (B:123-272)
1b: PFAM_HhH_GPD_2jhnB02 (B:123-272)
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Clans
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Families
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(
)
Organisms
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)
(
)
Clan
:
HHH
(112)
Family
:
HhH-GPD
(47)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(2)
1a
HhH-GPD-2jhnB01
B:123-272
1b
HhH-GPD-2jhnB02
B:123-272
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (118 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
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