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2JGD
Asym. Unit
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Asym.Unit (281 KB)
Biol.Unit 1 (272 KB)
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(1)
Title
:
E. COLI 2-OXOGLUTARATE DEHYDROGENASE (E1O)
Authors
:
R. A. W. Frank, A. J. Price, F. D. Northrop, R. N. Perham, B. F. Luisi
Date
:
12 Feb 07 (Deposition) - 27 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
2-Oxoglutarate Dehydrogenase, Flavoprotein, Oxidoreductase, Thiamine Diphosphate, Thiamine Pyrophosphate, Adenosine Monophosphate, E1O, Kgdh, Ogdh, Glycolysis, Oxaloacetate
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Reference
:
R. A. W. Frank, A. J. Price, F. D. Northrop, R. N. Perham, B. F. Luisi
Crystal Structure Of The E1 Component Of The Escherichia Coli 2-Oxoglutarate Dehydrogenase Multienzyme Complex.
J. Mol. Biol. V. 368 639 2007
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Hetero Components
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1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
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1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
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Sites
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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1
AC1
SOFTWARE
SER A:302 , HIS A:313 , ALA A:315 , ARG A:337 , MET A:526 , SER A:530 , PHE A:531 , TRP A:533 , THR A:673 , GLY A:709 , ARG A:710 , MET A:711 , HOH A:2145 , HOH A:2146 , HOH A:2335 , HOH A:2336 , HOH A:2337
BINDING SITE FOR RESIDUE AMP A1934
2
AC2
SOFTWARE
SER B:302 , HIS B:313 , ALA B:315 , ARG B:337 , SER B:530 , PHE B:531 , TRP B:533 , THR B:673 , GLY B:709 , ARG B:710 , MET B:711 , HOH B:2394 , HOH B:2395 , HOH B:2396 , HOH B:2397 , HOH B:2398
BINDING SITE FOR RESIDUE AMP B1934
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Pfam Domains
(2, 4)
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all PFAM domains
1a: PFAM_E1_dh_2jgdB01 (B:207-516)
1b: PFAM_E1_dh_2jgdB02 (B:207-516)
2a: PFAM_Transket_pyr_2jgdB03 (B:589-785)
2b: PFAM_Transket_pyr_2jgdB04 (B:589-785)
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Clan
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THDP-binding
(106)
Family
:
E1_dh
(27)
Escherichia coli (strain K12)
(1)
1a
E1_dh-2jgdB01
B:207-516
1b
E1_dh-2jgdB02
B:207-516
Family
:
Transket_pyr
(45)
Escherichia coli (strain K12)
(5)
2a
Transket_pyr-2jgdB03
B:589-785
2b
Transket_pyr-2jgdB04
B:589-785
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