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2JG4
Biol. Unit 2
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Asym.Unit (328 KB)
Biol.Unit 1 (165 KB)
Biol.Unit 2 (162 KB)
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(1)
Title
:
SUBSTRATE-FREE IDE STRUCTURE IN ITS CLOSED CONFORMATION
Authors
:
E. Malito, W. J. Tang
Date
:
07 Feb 07 (Deposition) - 03 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Metal-Binding, Metalloprotease, Protease, Zinc, X-Ray Crystallography
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Im, M. Manolopoulou, E. Malito, Y. Shen, J. Zhao, M. Neant-Fery, C. -Y. Sun, S. C. Meredith, S. S. Sisodia, M. A. Leissring, W. J. Tang
Structure Of Substrate-Free Human Insulin Degrading Enzyme (Ide) And Biophysical Analysis Of Atp-Induced Conformational Switch Of Ide
J. Biol. Chem. V. 282 25453 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
1b: 1,4-DIETHYLENE DIOXIDE (DIOb)
1c: 1,4-DIETHYLENE DIOXIDE (DIOc)
1d: 1,4-DIETHYLENE DIOXIDE (DIOd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
DIO
2
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
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1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS B:108 , HIS B:112 , GLU B:189
BINDING SITE FOR RESIDUE ZN B2012
2
AC3
SOFTWARE
LEU B:201 , GLU B:205 , THR B:208 , ARG B:477 , HOH B:3063
BINDING SITE FOR RESIDUE DIO B2013
3
AC6
SOFTWARE
GLN B:800 , ARG B:839 , ASN B:841 , GLY B:842 , HOH B:3171
BINDING SITE FOR RESIDUE DIO B2014
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SAPs(SNPs)/Variants
(1, 1)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051571 (E612K, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051571
E
612
K
IDE_HUMAN
Polymorphism
2229708
B
E
612
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (B:95-118)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
IDE_HUMAN
95-118
1
-
B:95-118
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Peptidase_M16_2jg4B01 (B:74-212)
1b: PFAM_Peptidase_M16_2jg4B02 (B:74-212)
2a: PFAM_Peptidase_M16_C_2jg4B03 (B:706-889)
2b: PFAM_Peptidase_M16_C_2jg4B04 (B:706-889)
2c: PFAM_Peptidase_M16_C_2jg4B05 (B:706-889)
2d: PFAM_Peptidase_M16_C_2jg4B06 (B:706-889)
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Clan
:
Peptidase_ME
(35)
Family
:
Peptidase_M16
(29)
Homo sapiens (Human)
(8)
1a
Peptidase_M16-2jg4B01
B:74-212
1b
Peptidase_M16-2jg4B02
B:74-212
Family
:
Peptidase_M16_C
(29)
Homo sapiens (Human)
(8)
2a
Peptidase_M16_C-2jg4B03
B:706-889
2b
Peptidase_M16_C-2jg4B04
B:706-889
2c
Peptidase_M16_C-2jg4B05
B:706-889
2d
Peptidase_M16_C-2jg4B06
B:706-889
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Chain B
Asymmetric Unit 1
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